[kepler-users] Sample workflow using JobSubmission/JobManager

[Valente, Eduardo G. (GSFC-610.3)[GLOBAL SCIENCE & TECHNOLOGY INC]]

Thanks.  The workflow crashes kepler at a "type detection" step.  So I am trying just the SSH session step for starters.  I am running in an environment with two-factor authentication.  So I authenticate ssh with control master enabled hoping that subsequent ssh attempts by kepler use the existing open connection.   At the kepler workflow I set up the ssh session with an identity file hoping it would use the control master session, but it is failing to do so.  Any thoughts on this mode of operation?
Eduardo

From: Jianwu Wang <jianwu at sdsc.edu<mailto:jianwu at sdsc.edu>>
Date: Wednesday, October 31, 2012 5:50 PM
To: "Valente, Eduardo G. (GSFC-610.3)[GLOBAL SCIENCE & TECHNOLOGY INC]" <eduardo.g.valente at nasa.gov<mailto:eduardo.g.valente at nasa.gov>>
Cc: "kepler-users at kepler-project.org<mailto:kepler-users at kepler-project.org>" <kepler-users at kepler-project.org<mailto:kepler-users at kepler-project.org>>
Subject: Re: [kepler-users] Sample workflow using JobSubmission/JobManager

Hi Eduardo,

    A sample workflow using JobSubmission/JobManager can be found at https://code.kepler-project.org/code/kepler/trunk/workflows/SC06-Tutorial/JobSubmission.xml. To use it in PBS environment,  you just need to edit the 'JobManager' parameter to be 'PBS'. Other parameters such as 'SimTarget' and 'JobScript' also need to be configured to fit your information.

Best wishes

Sincerely yours

Jianwu Wang, Ph.D.
jianwu at sdsc.edu<mailto:jianwu at sdsc.edu>http://users.sdsc.edu/~jianwu/

Assistant Project Scientist
Scientific Workflow Automation Technologies (SWAT) Laboratory
San Diego Supercomputer Center
University of California, San Diego
San Diego, CA, U.S.A.

On 10/31/12 2:22 PM, Valente, Eduardo G. (GSFC-610.3)[GLOBAL SCIENCE & TECHNOLOGY INC] wrote:
Does anyone have a sample workflow that exercises a PBS based HPC environment that they would like to share?
Thanks.




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