<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif; "><div>Thanks. The workflow crashes kepler at a "type detection" step. So I am trying just the SSH session step for starters. I am running in an environment with two-factor authentication. So I authenticate ssh with control master enabled hoping that subsequent ssh attempts by kepler use the existing open connection. At the kepler workflow I set up the ssh session with an identity file hoping it would use the control master session, but it is failing to do so. Any thoughts on this mode of operation?</div><div>Eduardo</div><div><br></div><span id="OLK_SRC_BODY_SECTION"><div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt"><span style="font-weight:bold">From: </span> Jianwu Wang <<a href="mailto:jianwu@sdsc.edu">jianwu@sdsc.edu</a>><br><span style="font-weight:bold">Date: </span> Wednesday, October 31, 2012 5:50 PM<br><span style="font-weight:bold">To: </span> "Valente, Eduardo G. (GSFC-610.3)[GLOBAL SCIENCE & TECHNOLOGY INC]" <<a href="mailto:eduardo.g.valente@nasa.gov">eduardo.g.valente@nasa.gov</a>><br><span style="font-weight:bold">Cc: </span> "<a href="mailto:kepler-users@kepler-project.org">kepler-users@kepler-project.org</a>" <<a href="mailto:kepler-users@kepler-project.org">kepler-users@kepler-project.org</a>><br><span style="font-weight:bold">Subject: </span> Re: [kepler-users] Sample workflow using JobSubmission/JobManager<br></div><div><br></div><div>
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<div class="moz-cite-prefix">Hi Eduardo,<br>
<br>
A sample workflow using JobSubmission/JobManager can be found
at
<a class="moz-txt-link-freetext" href="https://code.kepler-project.org/code/kepler/trunk/workflows/SC06-Tutorial/JobSubmission.xml">https://code.kepler-project.org/code/kepler/trunk/workflows/SC06-Tutorial/JobSubmission.xml</a>.
To use it in PBS environment, you just need to edit the
'JobManager' parameter to be 'PBS'. Other parameters such as
'SimTarget' and 'JobScript' also need to be configured to fit your
information.<br>
<pre class="moz-signature" cols="72">Best wishes
Sincerely yours
Jianwu Wang, Ph.D.
<a class="moz-txt-link-abbreviated" href="mailto:jianwu@sdsc.edu">jianwu@sdsc.edu</a><a class="moz-txt-link-freetext" href="http://users.sdsc.edu/~jianwu/">http://users.sdsc.edu/~jianwu/</a>
Assistant Project Scientist
Scientific Workflow Automation Technologies (SWAT) Laboratory
San Diego Supercomputer Center
University of California, San Diego
San Diego, CA, U.S.A. </pre>
On 10/31/12 2:22 PM, Valente, Eduardo G. (GSFC-610.3)[GLOBAL
SCIENCE & TECHNOLOGY INC] wrote:<br>
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<blockquote cite="mid:CCB70EE0.D0C9%25eduardo.g.valente@nasa.gov" type="cite">
<div>Does anyone have a sample workflow that exercises a PBS based
HPC environment that they would like to share? </div>
<div>Thanks.</div>
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