[kepler-users] Sample workflow using JobSubmission/JobManager

[Jianwu Wang]

Hi Eduardo,

     So you failed even just using 'SSH Session' actor? Did you get any 
error or exception message? It's new to me for the two-factor 
authentication. If you tell me how to reproduce it, I can dig into it 
and check what went wrong.

Best wishes

Sincerely yours

Jianwu Wang, Ph.D.
jianwu at sdsc.edu
http://users.sdsc.edu/~jianwu/

Assistant Project Scientist
Scientific Workflow Automation Technologies (SWAT) Laboratory
San Diego Supercomputer Center
University of California, San Diego
San Diego, CA, U.S.A.

On 11/1/12 1:45 PM, Valente, Eduardo G. (GSFC-610.3)[GLOBAL SCIENCE & 
TECHNOLOGY INC] wrote:
> Thanks.  The workflow crashes kepler at a "type detection" step.  So I 
> am trying just the SSH session step for starters.  I am running in an 
> environment with two-factor authentication.  So I authenticate ssh 
> with control master enabled hoping that subsequent ssh attempts by 
> kepler use the existing open connection.   At the kepler workflow I 
> set up the ssh session with an identity file hoping it would use the 
> control master session, but it is failing to do so.  Any thoughts on 
> this mode of operation?
> Eduardo
>
> From: Jianwu Wang <jianwu at sdsc.edu <mailto:jianwu at sdsc.edu>>
> Date: Wednesday, October 31, 2012 5:50 PM
> To: "Valente, Eduardo G. (GSFC-610.3)[GLOBAL SCIENCE & TECHNOLOGY 
> INC]" <eduardo.g.valente at nasa.gov <mailto:eduardo.g.valente at nasa.gov>>
> Cc: "kepler-users at kepler-project.org 
> <mailto:kepler-users at kepler-project.org>" 
> <kepler-users at kepler-project.org <mailto:kepler-users at kepler-project.org>>
> Subject: Re: [kepler-users] Sample workflow using JobSubmission/JobManager
>
> Hi Eduardo,
>
>     A sample workflow using JobSubmission/JobManager can be found at 
> https://code.kepler-project.org/code/kepler/trunk/workflows/SC06-Tutorial/JobSubmission.xml. 
> To use it in PBS environment,  you just need to edit the 'JobManager' 
> parameter to be 'PBS'. Other parameters such as 'SimTarget' and 
> 'JobScript' also need to be configured to fit your information.
> Best wishes
>
> Sincerely yours
>
> Jianwu Wang, Ph.D.
> jianwu at sdsc.eduhttp://users.sdsc.edu/~jianwu/
>
> Assistant Project Scientist
> Scientific Workflow Automation Technologies (SWAT) Laboratory
> San Diego Supercomputer Center
> University of California, San Diego
> San Diego, CA, U.S.A.
> On 10/31/12 2:22 PM, Valente, Eduardo G. (GSFC-610.3)[GLOBAL SCIENCE & 
> TECHNOLOGY INC] wrote:
>> Does anyone have a sample workflow that exercises a PBS based HPC 
>> environment that they would like to share?
>> Thanks.
>>
>>
>>
>> _______________________________________________
>> Kepler-users mailing list
>> Kepler-users at kepler-project.orghttp://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users
>

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