[kepler-users] Adding my own ontology to the Kepler 2.3 semantic types

[Sean Riddle]

Yes, there is. That's just a GUI to edit ontology_catalog.xml, though, I
think.

- Sean

On Thu, Apr 26, 2012 at 2:28 PM, Shawn Bowers <bowers at gonzaga.edu> wrote:

> Hi,
>
> If I recall correctly, I thought there was also a way to "register" an
> ontology via the tag editor (not sure what this is called)? I know
> this was in an initial version of the tagging module.  I don't have it
> up and running here to check ...
>
> Shawn
>
> On Thu, Apr 26, 2012 at 2:23 PM, Sean Riddle <swriddle at gmail.com> wrote:
> > If I recall, the ontology_catalog.xml file you edited is copied into
> place
> > in the ~/.kepler directory if it is not already there. Adding your edit
> to
> > the copy in .kepler (or just deleting the copy in .kepler, which should
> > re-copy your modified version) should get you up and running.
> >
> > Also, I would try using absolute paths to your ontologies first and then
> > experimenting to determine with respect to what local pathnames are
> > calculated (probably the main Kepler directory).
> >
> > - Sean
> >
> > On Thu, Apr 26, 2012 at 5:13 AM, <Michael.O'Connor at csiro.au> wrote:
> >>
> >> I wanted to add my own ontology to Kepler, so that I could semantically
> >> annotate inputs and outputs in my workflows.
> >>
> >> I have found at least one message in the kepler-user lists that
> discusses
> >> this:
> >>
> >>
> http://lists.nceas.ucsb.edu/ecoinformatics/pipermail/kepler-users/2006-January/000053.html
> >>
> >> Followed the suggestions by:
> >> — adding my .owl file to
> >>
> /Applications/Kepler-2.3/Kepler.app/Contents/Resources/Java/common-2.3.0/configs/ptolemy/configs/kepler/ontologies
> >> — in the same folder I added an entry to ontology_catalog.xml i.e.
> >> <ontology filename="myOwl.owl" library="false"/>
> >>
> >> My ontology did not appear in the list of Categories in the Input tab of
> >> the Semantic Type Annotation dialog.
> >>
> >> Next approach — my ontology might not be correctly formed as far as
> Kepler
> >> is concerned (it does open fine in Protege 4.2)?  So I made a copy of
> one of
> >> the SEEK ontologies and tried that, as above, but the same lack of
> result.
> >>
> >> Perhaps I'm putting the ontology in the wrong place (i.e. not inside the
> >> folder for the Application) or I have to rebuild or compile something
> to get
> >> this to work.
> >>
> >> Any help gratefully received,
> >>
> >> — Mike
> >> _______________________________________________
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> >> Kepler-users at kepler-project.org
> >> http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users
> >
> >
> >
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> >
>
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