[kepler-dev] Can not open GUI with fresh Kepler check up .

Thu Sep 17 17:45:31 PDT 2009

Seems to be better now.

Aaron Schultz wrote:
>
> My fault, almost fixed...
>
>
> Derik Barseghian wrote:
>> Hi Jianwu,
>>
>> I just did a fresh checkout on linux (r20717) and the gui comes up 
>> for me.
>>
>> However I get a lot of warnings and then a number of errors to do 
>> with kar files, like:
>>
>>      [run] WARN  (org.kepler.kar.KARFile:populateCacheObjects:347) 
>> null KAREntry was not
>> recognized: PolygonDiagramsTransition.xml
>>      [run] WARN
>> (org.kepler.kar.KARCacheManager:synchronizeKARCacheWithLocalRepositories:153) 
>> Unable to
>> process kar file 
>> "/home/barseghian/dev3/new.kepler/actors/kar/actors-AddPointToSVG.kar".
>>      [run] org.kepler.objectmanager.cache.CacheException: Error 
>> creating KARCacheObject: null
>>      [run]     at 
>> org.kepler.kar.KARFile.populateCacheObjects(KARFile.java:364)
>>      [run]     at
>> org.kepler.kar.KARCacheManager.synchronizeKARCacheWithLocalRepositories(KARCacheManager.java:148) 
>>
>>      [run]     at
>> org.kepler.objectmanager.library.LibraryManager.buildLibrary(LibraryManager.java:904) 
>>
>>      [run]     at
>> org.kepler.objectmanager.library.LibraryManager.initialize(LibraryManager.java:1244) 
>>
>>
>>
>> Derik
>>
>>
>> On Sep 17, 2009, at 3:25 PM, Jianwu Wang wrote:
>>
>>> Hi guys,
>>>
>>>   I just did a fresh check-out with version 20717 and use 'ant 
>>> clean-cache run'. But I can not open the gui. Does anyone know why? 
>>> Thanks
>>>
>>> kepler:build-area jianwu$ ant clean-cache run
>>> Buildfile: build.xml
>>> Trying to override old definition of task patch
>>>
>>> clean-kar:
>>> [clean-kar] Deleting directory 
>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/r/kar
>>> [clean-kar] Deleting directory 
>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/actors/kar 
>>>
>>> [clean-kar] Deleting directory 
>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/directors/kar 
>>>
>>>
>>> clean-cache:
>>>  [delete] Deleting directory /Users/jianwu/.kepler
>>>
>>> compile:
>>> [compile] Compiling module-manager...
>>> [compile] Getting Ptolemy paths from 
>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy/.classpath.default 
>>>
>>> [compile] Compiling core...
>>> [compile] Compiling event-state...
>>> [compile] Compiling util...
>>> [compile] Compiling component-library...
>>> [compile] Compiling sms...
>>> [compile] Compiling data-handling...
>>> [compile] Compiling ssh...
>>> [compile] Compiling io...
>>> [compile] Compiling job...
>>> [compile] Compiling repository...
>>> [compile] Compiling authentication...
>>> [compile] Compiling gui...
>>> [compile] Compiling authentication-gui...
>>> [compile] Compiling ecogrid...
>>> [compile] Compiling opendap...
>>> [compile] Compiling actors...
>>> [compile] Compiling loader...
>>> [compile] Compiling r...
>>> [compile] Compiling apple-extensions...
>>>
>>> run:
>>>     [run] Getting Ptolemy paths from 
>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy/.classpath.default 
>>>
>>>     [run] Set environment variable: PATH = 
>>> /sw/bin:/sw/sbin:/opt/subversion/bin:/Applications/MATLAB_R2008b.app/bin:/Users/jianwu/Projects/hadoop/hadoop-0.20.0/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/usr/X11R6/bin:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/kepler/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/apple-extensions/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/r/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/loader/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/actors/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/directors/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/opendap/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ecogrid/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/authentication-gui/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/gui/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/authentication/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/repository/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/job/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/io/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ssh/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/data-handling/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/sms/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/component-library/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/util/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/event-state/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/core/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/common/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptII/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/mod 
>>>
> ule
>>>
>>> -manager/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy-lib/lib 
>>>
>>>     [run] Set environment variable: R_HOME = 
>>> /Library/Frameworks/R.framework/Resources
>>>     [run] 
>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules
>>>     [run] Found OS Extension file: 
>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/apple-extensions/module-info/osextension.txt 
>>>
>>>     [run] loading OS extensions for OS  Mac OS X with class 
>>> org.kepler.osx.KeplerOSXExtension
>>>     [run] Building Kars...
>>>     [run] Command failed
>>>     [run] Arguments: -kepler
>>>     [run]
>>>     [run] java.lang.Exception: Failed to parse "-kepler"
>>>     [run]     at 
>>> ptolemy.actor.gui.ConfigurationApplication.throwArgsException(ConfigurationApplication.java:635) 
>>>
>>>     [run]     at 
>>> ptolemy.actor.gui.ConfigurationApplication.<init>(ConfigurationApplication.java:292) 
>>>
>>>     [run]     at 
>>> ptolemy.actor.gui.MoMLApplication.<init>(MoMLApplication.java:81)
>>>     [run]     at 
>>> ptolemy.vergil.VergilApplication.<init>(VergilApplication.java:104)
>>>     [run]     at 
>>> ptolemy.vergil.VergilApplication$1.run(VergilApplication.java:194)
>>>     [run]     at 
>>> java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
>>>     [run]     at java.awt.EventQueue.dispatchEvent(EventQueue.java:633)
>>>     [run]     at 
>>> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) 
>>>
>>>     [run]     at 
>>> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) 
>>>
>>>     [run]     at 
>>> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) 
>>>
>>>     [run]     at 
>>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
>>>     [run]     at 
>>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
>>>     [run]     at 
>>> java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
>>>     [run] Caused by: java.lang.Exception: Failed to read 
>>> configuration 
>>> 'file:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/common/configs/ptolemy/configs/kepler/configuration.xml' 
>>>
>>>     [run]     at 
>>> ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:286) 
>>>
>>>     [run]     at 
>>> ptolemy.vergil.VergilApplication._createEmptyConfiguration(VergilApplication.java:322) 
>>>
>>>     [run]     at 
>>> ptolemy.actor.gui.ConfigurationApplication._parseArgs(ConfigurationApplication.java:1109) 
>>>
>>>     [run]     at 
>>> ptolemy.vergil.VergilApplication._parseArgs(VergilApplication.java:452)
>>>     [run]     at 
>>> ptolemy.actor.gui.ConfigurationApplication.<init>(ConfigurationApplication.java:226) 
>>>
>>>     [run]     ... 11 more
>>>     [run] Caused by: java.lang.Exception: Failed to call application 
>>> initializer class "org.kepler.gui.KeplerInitializer".  Perhaps the 
>>> configuration file 
>>> "file:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/common/configs/ptolemy/configs/kepler/configuration.xml" 
>>> has a problem?
>>>     [run]     at 
>>> ptolemy.actor.gui.ConfigurationApplication.readConfiguration(ConfigurationApplication.java:448) 
>>>
>>>     [run]     at 
>>> ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:284) 
>>>
>>>     [run]     ... 15 more
>>>     [run] Caused by: java.sql.SQLException: Failed to connect to url 
>>> "jdbc:hsqldb:hsql://localhost/hsqldb" as user "sa. Perhaps there was 
>>> an error launching the db server. In addition, sometimes the 
>>> database cache can become corrupt, so another solution is to remove 
>>> the "/Users/jianwu/.kepler/cache/cachedata/hsqldb" directory.
>>>     [run]     at 
>>> org.kepler.util.DBConnectionFactory.getDBConnection(DBConnectionFactory.java:126) 
>>>
>>>     [run]     at 
>>> org.kepler.util.DBConnectionFactory.getDBConnection(DBConnectionFactory.java:99) 
>>>
>>>     [run]     at 
>>> org.kepler.gui.KeplerInitializer.initializeSystem(KeplerInitializer.java:156) 
>>>
>>>     [run]     at 
>>> org.kepler.gui.KeplerInitializer.<init>(KeplerInitializer.java:92)
>>>     [run]     at 
>>> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
>>>     [run]     at 
>>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) 
>>>
>>>     [run]     at 
>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) 
>>>
>>>     [run]     at 
>>> java.lang.reflect.Constructor.newInstance(Constructor.java:513)
>>>     [run]     at java.lang.Class.newInstance0(Class.java:355)
>>>     [run]     at java.lang.Class.newInstance(Class.java:308)
>>>     [run]     at 
>>> ptolemy.actor.gui.ConfigurationApplication.readConfiguration(ConfigurationApplication.java:446) 
>>>
>>>     [run]     ... 16 more
>>>
>>> BUILD SUCCESSFUL
>>> Total time: 15 seconds
>>>
>>> -- 
>>>
>>> Best wishes
>>>
>>> Sincerely yours
>>>
>>> Jianwu Wang
>>> wangjianwu at gmail.com
>>>
>>> Post-Doctor
>>> Scientific Workflow Automation Technologies (SWAT) Laboratory
>>> San Diego Supercomputer Center University of California, San Diego
>>> San Diego, U.S.A.
>>>
>>> _______________________________________________
>>> Kepler-dev mailing list
>>> Kepler-dev at kepler-project.org
>>> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-dev
>>
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>
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