[kepler-dev] Can not open GUI with fresh Kepler check up .

Thu Sep 17 17:28:18 PDT 2009

My fault, almost fixed...

Derik Barseghian wrote:
> Hi Jianwu,
>
> I just did a fresh checkout on linux (r20717) and the gui comes up for 
> me.
>
> However I get a lot of warnings and then a number of errors to do with 
> kar files, like:
>
>      [run] WARN  (org.kepler.kar.KARFile:populateCacheObjects:347) 
> null KAREntry was not
> recognized: PolygonDiagramsTransition.xml
>      [run] WARN
> (org.kepler.kar.KARCacheManager:synchronizeKARCacheWithLocalRepositories:153) 
> Unable to
> process kar file 
> "/home/barseghian/dev3/new.kepler/actors/kar/actors-AddPointToSVG.kar".
>      [run] org.kepler.objectmanager.cache.CacheException: Error 
> creating KARCacheObject: null
>      [run]     at 
> org.kepler.kar.KARFile.populateCacheObjects(KARFile.java:364)
>      [run]     at
> org.kepler.kar.KARCacheManager.synchronizeKARCacheWithLocalRepositories(KARCacheManager.java:148) 
>
>      [run]     at
> org.kepler.objectmanager.library.LibraryManager.buildLibrary(LibraryManager.java:904) 
>
>      [run]     at
> org.kepler.objectmanager.library.LibraryManager.initialize(LibraryManager.java:1244) 
>
>
>
> Derik
>
>
> On Sep 17, 2009, at 3:25 PM, Jianwu Wang wrote:
>
>> Hi guys,
>>
>>   I just did a fresh check-out with version 20717 and use 'ant 
>> clean-cache run'. But I can not open the gui. Does anyone know why? 
>> Thanks
>>
>> kepler:build-area jianwu$ ant clean-cache run
>> Buildfile: build.xml
>> Trying to override old definition of task patch
>>
>> clean-kar:
>> [clean-kar] Deleting directory 
>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/r/kar
>> [clean-kar] Deleting directory 
>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/actors/kar 
>>
>> [clean-kar] Deleting directory 
>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/directors/kar 
>>
>>
>> clean-cache:
>>  [delete] Deleting directory /Users/jianwu/.kepler
>>
>> compile:
>> [compile] Compiling module-manager...
>> [compile] Getting Ptolemy paths from 
>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy/.classpath.default 
>>
>> [compile] Compiling core...
>> [compile] Compiling event-state...
>> [compile] Compiling util...
>> [compile] Compiling component-library...
>> [compile] Compiling sms...
>> [compile] Compiling data-handling...
>> [compile] Compiling ssh...
>> [compile] Compiling io...
>> [compile] Compiling job...
>> [compile] Compiling repository...
>> [compile] Compiling authentication...
>> [compile] Compiling gui...
>> [compile] Compiling authentication-gui...
>> [compile] Compiling ecogrid...
>> [compile] Compiling opendap...
>> [compile] Compiling actors...
>> [compile] Compiling loader...
>> [compile] Compiling r...
>> [compile] Compiling apple-extensions...
>>
>> run:
>>     [run] Getting Ptolemy paths from 
>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy/.classpath.default 
>>
>>     [run] Set environment variable: PATH = 
>> /sw/bin:/sw/sbin:/opt/subversion/bin:/Applications/MATLAB_R2008b.app/bin:/Users/jianwu/Projects/hadoop/hadoop-0.20.0/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/usr/X11R6/bin:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/kepler/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/apple-extensions/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/r/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/loader/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/actors/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/directors/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/opendap/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ecogrid/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/authentication-gui/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/gui/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/authentication/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/repository/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/job/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/io/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ssh/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/data-handling/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/sms/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/component-library/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/util/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/event-state/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/core/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/common/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptII/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/module 
>>
>> -manager/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy-lib/lib 
>>
>>     [run] Set environment variable: R_HOME = 
>> /Library/Frameworks/R.framework/Resources
>>     [run] 
>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules
>>     [run] Found OS Extension file: 
>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/apple-extensions/module-info/osextension.txt 
>>
>>     [run] loading OS extensions for OS  Mac OS X with class 
>> org.kepler.osx.KeplerOSXExtension
>>     [run] Building Kars...
>>     [run] Command failed
>>     [run] Arguments: -kepler
>>     [run]
>>     [run] java.lang.Exception: Failed to parse "-kepler"
>>     [run]     at 
>> ptolemy.actor.gui.ConfigurationApplication.throwArgsException(ConfigurationApplication.java:635) 
>>
>>     [run]     at 
>> ptolemy.actor.gui.ConfigurationApplication.<init>(ConfigurationApplication.java:292) 
>>
>>     [run]     at 
>> ptolemy.actor.gui.MoMLApplication.<init>(MoMLApplication.java:81)
>>     [run]     at 
>> ptolemy.vergil.VergilApplication.<init>(VergilApplication.java:104)
>>     [run]     at 
>> ptolemy.vergil.VergilApplication$1.run(VergilApplication.java:194)
>>     [run]     at 
>> java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
>>     [run]     at java.awt.EventQueue.dispatchEvent(EventQueue.java:633)
>>     [run]     at 
>> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) 
>>
>>     [run]     at 
>> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) 
>>
>>     [run]     at 
>> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) 
>>
>>     [run]     at 
>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
>>     [run]     at 
>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
>>     [run]     at 
>> java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
>>     [run] Caused by: java.lang.Exception: Failed to read 
>> configuration 
>> 'file:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/common/configs/ptolemy/configs/kepler/configuration.xml' 
>>
>>     [run]     at 
>> ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:286) 
>>
>>     [run]     at 
>> ptolemy.vergil.VergilApplication._createEmptyConfiguration(VergilApplication.java:322) 
>>
>>     [run]     at 
>> ptolemy.actor.gui.ConfigurationApplication._parseArgs(ConfigurationApplication.java:1109) 
>>
>>     [run]     at 
>> ptolemy.vergil.VergilApplication._parseArgs(VergilApplication.java:452)
>>     [run]     at 
>> ptolemy.actor.gui.ConfigurationApplication.<init>(ConfigurationApplication.java:226) 
>>
>>     [run]     ... 11 more
>>     [run] Caused by: java.lang.Exception: Failed to call application 
>> initializer class "org.kepler.gui.KeplerInitializer".  Perhaps the 
>> configuration file 
>> "file:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/common/configs/ptolemy/configs/kepler/configuration.xml" 
>> has a problem?
>>     [run]     at 
>> ptolemy.actor.gui.ConfigurationApplication.readConfiguration(ConfigurationApplication.java:448) 
>>
>>     [run]     at 
>> ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:284) 
>>
>>     [run]     ... 15 more
>>     [run] Caused by: java.sql.SQLException: Failed to connect to url 
>> "jdbc:hsqldb:hsql://localhost/hsqldb" as user "sa. Perhaps there was 
>> an error launching the db server. In addition, sometimes the database 
>> cache can become corrupt, so another solution is to remove the 
>> "/Users/jianwu/.kepler/cache/cachedata/hsqldb" directory.
>>     [run]     at 
>> org.kepler.util.DBConnectionFactory.getDBConnection(DBConnectionFactory.java:126) 
>>
>>     [run]     at 
>> org.kepler.util.DBConnectionFactory.getDBConnection(DBConnectionFactory.java:99) 
>>
>>     [run]     at 
>> org.kepler.gui.KeplerInitializer.initializeSystem(KeplerInitializer.java:156) 
>>
>>     [run]     at 
>> org.kepler.gui.KeplerInitializer.<init>(KeplerInitializer.java:92)
>>     [run]     at 
>> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
>>     [run]     at 
>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) 
>>
>>     [run]     at 
>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) 
>>
>>     [run]     at 
>> java.lang.reflect.Constructor.newInstance(Constructor.java:513)
>>     [run]     at java.lang.Class.newInstance0(Class.java:355)
>>     [run]     at java.lang.Class.newInstance(Class.java:308)
>>     [run]     at 
>> ptolemy.actor.gui.ConfigurationApplication.readConfiguration(ConfigurationApplication.java:446) 
>>
>>     [run]     ... 16 more
>>
>> BUILD SUCCESSFUL
>> Total time: 15 seconds
>>
>> -- 
>>
>> Best wishes
>>
>> Sincerely yours
>>
>> Jianwu Wang
>> wangjianwu at gmail.com
>>
>> Post-Doctor
>> Scientific Workflow Automation Technologies (SWAT) Laboratory
>> San Diego Supercomputer Center University of California, San Diego
>> San Diego, U.S.A.
>>
>> _______________________________________________
>> Kepler-dev mailing list
>> Kepler-dev at kepler-project.org
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>
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