[kepler-dev] Can not open GUI with fresh Kepler check up .
Jianwu Wang
jianwu at sdsc.edu
Thu Sep 17 21:15:28 PDT 2009
Hi Derik and Aaron,
Thanks for your info. New update on my window machine works now.
Haven't check it on my Mac machine.
Best wishes
Sincerely yours
Jianwu Wang
jianwu at sdsc.edu
http://users.sdsc.edu/~jianwu/
Scientific Workflow Automation Technologies (SWAT) Laboratory
San Diego Supercomputer Center
University of California, San Diego
San Diego, CA, U.S.A.
Aaron Schultz wrote:
>
> Seems to be better now.
>
> Aaron Schultz wrote:
>>
>> My fault, almost fixed...
>>
>>
>> Derik Barseghian wrote:
>>> Hi Jianwu,
>>>
>>> I just did a fresh checkout on linux (r20717) and the gui comes up
>>> for me.
>>>
>>> However I get a lot of warnings and then a number of errors to do
>>> with kar files, like:
>>>
>>> [run] WARN (org.kepler.kar.KARFile:populateCacheObjects:347)
>>> null KAREntry was not
>>> recognized: PolygonDiagramsTransition.xml
>>> [run] WARN
>>> (org.kepler.kar.KARCacheManager:synchronizeKARCacheWithLocalRepositories:153)
>>> Unable to
>>> process kar file
>>> "/home/barseghian/dev3/new.kepler/actors/kar/actors-AddPointToSVG.kar".
>>> [run] org.kepler.objectmanager.cache.CacheException: Error
>>> creating KARCacheObject: null
>>> [run] at
>>> org.kepler.kar.KARFile.populateCacheObjects(KARFile.java:364)
>>> [run] at
>>> org.kepler.kar.KARCacheManager.synchronizeKARCacheWithLocalRepositories(KARCacheManager.java:148)
>>>
>>> [run] at
>>> org.kepler.objectmanager.library.LibraryManager.buildLibrary(LibraryManager.java:904)
>>>
>>> [run] at
>>> org.kepler.objectmanager.library.LibraryManager.initialize(LibraryManager.java:1244)
>>>
>>>
>>>
>>> Derik
>>>
>>>
>>> On Sep 17, 2009, at 3:25 PM, Jianwu Wang wrote:
>>>
>>>> Hi guys,
>>>>
>>>> I just did a fresh check-out with version 20717 and use 'ant
>>>> clean-cache run'. But I can not open the gui. Does anyone know why?
>>>> Thanks
>>>>
>>>> kepler:build-area jianwu$ ant clean-cache run
>>>> Buildfile: build.xml
>>>> Trying to override old definition of task patch
>>>>
>>>> clean-kar:
>>>> [clean-kar] Deleting directory
>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/r/kar
>>>> [clean-kar] Deleting directory
>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/actors/kar
>>>>
>>>> [clean-kar] Deleting directory
>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/directors/kar
>>>>
>>>>
>>>> clean-cache:
>>>> [delete] Deleting directory /Users/jianwu/.kepler
>>>>
>>>> compile:
>>>> [compile] Compiling module-manager...
>>>> [compile] Getting Ptolemy paths from
>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy/.classpath.default
>>>>
>>>> [compile] Compiling core...
>>>> [compile] Compiling event-state...
>>>> [compile] Compiling util...
>>>> [compile] Compiling component-library...
>>>> [compile] Compiling sms...
>>>> [compile] Compiling data-handling...
>>>> [compile] Compiling ssh...
>>>> [compile] Compiling io...
>>>> [compile] Compiling job...
>>>> [compile] Compiling repository...
>>>> [compile] Compiling authentication...
>>>> [compile] Compiling gui...
>>>> [compile] Compiling authentication-gui...
>>>> [compile] Compiling ecogrid...
>>>> [compile] Compiling opendap...
>>>> [compile] Compiling actors...
>>>> [compile] Compiling loader...
>>>> [compile] Compiling r...
>>>> [compile] Compiling apple-extensions...
>>>>
>>>> run:
>>>> [run] Getting Ptolemy paths from
>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy/.classpath.default
>>>>
>>>> [run] Set environment variable: PATH =
>>>> /sw/bin:/sw/sbin:/opt/subversion/bin:/Applications/MATLAB_R2008b.app/bin:/Users/jianwu/Projects/hadoop/hadoop-0.20.0/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/usr/X11R6/bin:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/kepler/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/apple-extensions/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/r/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/loader/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/actors/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/directors/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/opendap/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ecogrid/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/authentication-gui/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/gui/lib:/Users/jianwu
>>>>
> /Kepler/repository/kepler/kepler-trunk-0909/modules/authentication/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/repository/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/job/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/io/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ssh/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/data-handling/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/sms/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/component-library/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/util/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/event-state/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/core/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/common/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptII/li
>
> b:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/mo
> d
>>>>
>> ule
>>>>
>>>> -manager/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy-lib/lib
>>>>
>>>> [run] Set environment variable: R_HOME =
>>>> /Library/Frameworks/R.framework/Resources
>>>> [run]
>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules
>>>> [run] Found OS Extension file:
>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/apple-extensions/module-info/osextension.txt
>>>>
>>>> [run] loading OS extensions for OS Mac OS X with class
>>>> org.kepler.osx.KeplerOSXExtension
>>>> [run] Building Kars...
>>>> [run] Command failed
>>>> [run] Arguments: -kepler
>>>> [run]
>>>> [run] java.lang.Exception: Failed to parse "-kepler"
>>>> [run] at
>>>> ptolemy.actor.gui.ConfigurationApplication.throwArgsException(ConfigurationApplication.java:635)
>>>>
>>>> [run] at
>>>> ptolemy.actor.gui.ConfigurationApplication.<init>(ConfigurationApplication.java:292)
>>>>
>>>> [run] at
>>>> ptolemy.actor.gui.MoMLApplication.<init>(MoMLApplication.java:81)
>>>> [run] at
>>>> ptolemy.vergil.VergilApplication.<init>(VergilApplication.java:104)
>>>> [run] at
>>>> ptolemy.vergil.VergilApplication$1.run(VergilApplication.java:194)
>>>> [run] at
>>>> java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
>>>> [run] at
>>>> java.awt.EventQueue.dispatchEvent(EventQueue.java:633)
>>>> [run] at
>>>> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
>>>>
>>>> [run] at
>>>> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
>>>>
>>>> [run] at
>>>> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
>>>>
>>>> [run] at
>>>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
>>>> [run] at
>>>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
>>>> [run] at
>>>> java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
>>>> [run] Caused by: java.lang.Exception: Failed to read
>>>> configuration
>>>> 'file:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/common/configs/ptolemy/configs/kepler/configuration.xml'
>>>>
>>>> [run] at
>>>> ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:286)
>>>>
>>>> [run] at
>>>> ptolemy.vergil.VergilApplication._createEmptyConfiguration(VergilApplication.java:322)
>>>>
>>>> [run] at
>>>> ptolemy.actor.gui.ConfigurationApplication._parseArgs(ConfigurationApplication.java:1109)
>>>>
>>>> [run] at
>>>> ptolemy.vergil.VergilApplication._parseArgs(VergilApplication.java:452)
>>>>
>>>> [run] at
>>>> ptolemy.actor.gui.ConfigurationApplication.<init>(ConfigurationApplication.java:226)
>>>>
>>>> [run] ... 11 more
>>>> [run] Caused by: java.lang.Exception: Failed to call
>>>> application initializer class "org.kepler.gui.KeplerInitializer".
>>>> Perhaps the configuration file
>>>> "file:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/common/configs/ptolemy/configs/kepler/configuration.xml"
>>>> has a problem?
>>>> [run] at
>>>> ptolemy.actor.gui.ConfigurationApplication.readConfiguration(ConfigurationApplication.java:448)
>>>>
>>>> [run] at
>>>> ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:284)
>>>>
>>>> [run] ... 15 more
>>>> [run] Caused by: java.sql.SQLException: Failed to connect to
>>>> url "jdbc:hsqldb:hsql://localhost/hsqldb" as user "sa. Perhaps
>>>> there was an error launching the db server. In addition, sometimes
>>>> the database cache can become corrupt, so another solution is to
>>>> remove the "/Users/jianwu/.kepler/cache/cachedata/hsqldb" directory.
>>>> [run] at
>>>> org.kepler.util.DBConnectionFactory.getDBConnection(DBConnectionFactory.java:126)
>>>>
>>>> [run] at
>>>> org.kepler.util.DBConnectionFactory.getDBConnection(DBConnectionFactory.java:99)
>>>>
>>>> [run] at
>>>> org.kepler.gui.KeplerInitializer.initializeSystem(KeplerInitializer.java:156)
>>>>
>>>> [run] at
>>>> org.kepler.gui.KeplerInitializer.<init>(KeplerInitializer.java:92)
>>>> [run] at
>>>> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
>>>> [run] at
>>>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
>>>>
>>>> [run] at
>>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
>>>>
>>>> [run] at
>>>> java.lang.reflect.Constructor.newInstance(Constructor.java:513)
>>>> [run] at java.lang.Class.newInstance0(Class.java:355)
>>>> [run] at java.lang.Class.newInstance(Class.java:308)
>>>> [run] at
>>>> ptolemy.actor.gui.ConfigurationApplication.readConfiguration(ConfigurationApplication.java:446)
>>>>
>>>> [run] ... 16 more
>>>>
>>>> BUILD SUCCESSFUL
>>>> Total time: 15 seconds
>>>>
>>>> --
>>>>
>>>> Best wishes
>>>>
>>>> Sincerely yours
>>>>
>>>> Jianwu Wang
>>>> wangjianwu at gmail.com
>>>>
>>>> Post-Doctor
>>>> Scientific Workflow Automation Technologies (SWAT) Laboratory
>>>> San Diego Supercomputer Center University of California, San Diego
>>>> San Diego, U.S.A.
>>>>
>>>> _______________________________________________
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>>>
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>>
>>
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