[kepler-dev] Can not open GUI with fresh Kepler check up .
Derik Barseghian
barseghian at nceas.ucsb.edu
Thu Sep 17 17:26:49 PDT 2009
Hi Jianwu,
I just did a fresh checkout on linux (r20717) and the gui comes up for
me.
However I get a lot of warnings and then a number of errors to do with
kar files, like:
[run] WARN (org.kepler.kar.KARFile:populateCacheObjects:347)
null KAREntry was not
recognized: PolygonDiagramsTransition.xml
[run] WARN
(org
.kepler.kar.KARCacheManager:synchronizeKARCacheWithLocalRepositories:
153) Unable to
process kar file "/home/barseghian/dev3/new.kepler/actors/kar/actors-
AddPointToSVG.kar".
[run] org.kepler.objectmanager.cache.CacheException: Error
creating KARCacheObject: null
[run] at
org.kepler.kar.KARFile.populateCacheObjects(KARFile.java:364)
[run] at
org
.kepler
.kar
.KARCacheManager
.synchronizeKARCacheWithLocalRepositories(KARCacheManager.java:148)
[run] at
org
.kepler
.objectmanager.library.LibraryManager.buildLibrary(LibraryManager.java:
904)
[run] at
org
.kepler
.objectmanager.library.LibraryManager.initialize(LibraryManager.java:
1244)
Derik
On Sep 17, 2009, at 3:25 PM, Jianwu Wang wrote:
> Hi guys,
>
> I just did a fresh check-out with version 20717 and use 'ant clean-
> cache run'. But I can not open the gui. Does anyone know why? Thanks
>
> kepler:build-area jianwu$ ant clean-cache run
> Buildfile: build.xml
> Trying to override old definition of task patch
>
> clean-kar:
> [clean-kar] Deleting directory /Users/jianwu/Kepler/repository/
> kepler/kepler-trunk-0909/modules/r/kar
> [clean-kar] Deleting directory /Users/jianwu/Kepler/repository/
> kepler/kepler-trunk-0909/modules/actors/kar
> [clean-kar] Deleting directory /Users/jianwu/Kepler/repository/
> kepler/kepler-trunk-0909/modules/directors/kar
>
> clean-cache:
> [delete] Deleting directory /Users/jianwu/.kepler
>
> compile:
> [compile] Compiling module-manager...
> [compile] Getting Ptolemy paths from /Users/jianwu/Kepler/repository/
> kepler/kepler-trunk-0909/modules/ptolemy/.classpath.default
> [compile] Compiling core...
> [compile] Compiling event-state...
> [compile] Compiling util...
> [compile] Compiling component-library...
> [compile] Compiling sms...
> [compile] Compiling data-handling...
> [compile] Compiling ssh...
> [compile] Compiling io...
> [compile] Compiling job...
> [compile] Compiling repository...
> [compile] Compiling authentication...
> [compile] Compiling gui...
> [compile] Compiling authentication-gui...
> [compile] Compiling ecogrid...
> [compile] Compiling opendap...
> [compile] Compiling actors...
> [compile] Compiling loader...
> [compile] Compiling r...
> [compile] Compiling apple-extensions...
>
> run:
> [run] Getting Ptolemy paths from /Users/jianwu/Kepler/repository/
> kepler/kepler-trunk-0909/modules/ptolemy/.classpath.default
> [run] Set environment variable: PATH = /sw/bin:/sw/sbin:/opt/
> subversion/bin:/Applications/MATLAB_R2008b.app/bin:/Users/jianwu/
> Projects/hadoop/hadoop-0.20.0/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/
> local/bin:/usr/X11/bin:/usr/X11R6/bin:/Users/jianwu/Kepler/
> repository/kepler/kepler-trunk-0909/modules/kepler/lib:/Users/jianwu/
> Kepler/repository/kepler/kepler-trunk-0909/modules/apple-extensions/
> lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/
> r/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/
> modules/loader/lib:/Users/jianwu/Kepler/repository/kepler/kepler-
> trunk-0909/modules/actors/lib:/Users/jianwu/Kepler/repository/kepler/
> kepler-trunk-0909/modules/directors/lib:/Users/jianwu/Kepler/
> repository/kepler/kepler-trunk-0909/modules/opendap/lib:/Users/
> jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ecogrid/
> lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/
> authentication-gui/lib:/Users/jianwu/Kepler/repository/kepler/kepler-
> trunk-0909/modules/gui/lib:/Users/jianwu/Kepler/repository/kepler/
> kepler-trunk-0909/modules/authentication/lib:/Users/jianwu/Kepler/
> repository/kepler/kepler-trunk-0909/modules/repository/lib:/Users/
> jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/job/lib:/
> Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/io/
> lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/
> ssh/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/
> modules/data-handling/lib:/Users/jianwu/Kepler/repository/kepler/
> kepler-trunk-0909/modules/sms/lib:/Users/jianwu/Kepler/repository/
> kepler/kepler-trunk-0909/modules/component-library/lib:/Users/jianwu/
> Kepler/repository/kepler/kepler-trunk-0909/modules/util/lib:/Users/
> jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/event-
> state/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/
> modules/core/lib:/Users/jianwu/Kepler/repository/kepler/kepler-
> trunk-0909/modules/common/lib:/Users/jianwu/Kepler/repository/kepler/
> kepler-trunk-0909/modules/ptII/lib:/Users/jianwu/Kepler/repository/
> kepler/kepler-trunk-0909/modules/module
> -manager/lib:/Users/jianwu/Kepler/repository/kepler/kepler-
> trunk-0909/modules/ptolemy/lib:/Users/jianwu/Kepler/repository/
> kepler/kepler-trunk-0909/modules/ptolemy-lib/lib
> [run] Set environment variable: R_HOME = /Library/Frameworks/
> R.framework/Resources
> [run] /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/
> modules
> [run] Found OS Extension file: /Users/jianwu/Kepler/repository/
> kepler/kepler-trunk-0909/modules/apple-extensions/module-info/
> osextension.txt
> [run] loading OS extensions for OS Mac OS X with class
> org.kepler.osx.KeplerOSXExtension
> [run] Building Kars...
> [run] Command failed
> [run] Arguments: -kepler
> [run]
> [run] java.lang.Exception: Failed to parse "-kepler"
> [run] at
> ptolemy
> .actor
> .gui
> .ConfigurationApplication
> .throwArgsException(ConfigurationApplication.java:635)
> [run] at
> ptolemy
> .actor
> .gui.ConfigurationApplication.<init>(ConfigurationApplication.java:
> 292)
> [run] at
> ptolemy.actor.gui.MoMLApplication.<init>(MoMLApplication.java:81)
> [run] at
> ptolemy.vergil.VergilApplication.<init>(VergilApplication.java:104)
> [run] at ptolemy.vergil.VergilApplication
> $1.run(VergilApplication.java:194)
> [run] at
> java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
> [run] at java.awt.EventQueue.dispatchEvent(EventQueue.java:
> 633)
> [run] at
> java
> .awt
> .EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:
> 296)
> [run] at
> java
> .awt
> .EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
> [run] at
> java
> .awt
> .EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:
> 201)
> [run] at
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
> [run] at
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
> [run] at
> java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
> [run] Caused by: java.lang.Exception: Failed to read
> configuration 'file:/Users/jianwu/Kepler/repository/kepler/kepler-
> trunk-0909/modules/common/configs/ptolemy/configs/kepler/
> configuration.xml'
> [run] at
> ptolemy
> .vergil
> .VergilApplication
> ._createDefaultConfiguration(VergilApplication.java:286)
> [run] at
> ptolemy
> .vergil
> .VergilApplication._createEmptyConfiguration(VergilApplication.java:
> 322)
> [run] at
> ptolemy
> .actor
> .gui
> .ConfigurationApplication._parseArgs(ConfigurationApplication.java:
> 1109)
> [run] at
> ptolemy.vergil.VergilApplication._parseArgs(VergilApplication.java:
> 452)
> [run] at
> ptolemy
> .actor
> .gui.ConfigurationApplication.<init>(ConfigurationApplication.java:
> 226)
> [run] ... 11 more
> [run] Caused by: java.lang.Exception: Failed to call application
> initializer class "org.kepler.gui.KeplerInitializer". Perhaps the
> configuration file "file:/Users/jianwu/Kepler/repository/kepler/
> kepler-trunk-0909/modules/common/configs/ptolemy/configs/kepler/
> configuration.xml" has a problem?
> [run] at
> ptolemy
> .actor
> .gui
> .ConfigurationApplication
> .readConfiguration(ConfigurationApplication.java:448)
> [run] at
> ptolemy
> .vergil
> .VergilApplication
> ._createDefaultConfiguration(VergilApplication.java:284)
> [run] ... 15 more
> [run] Caused by: java.sql.SQLException: Failed to connect to url
> "jdbc:hsqldb:hsql://localhost/hsqldb" as user "sa. Perhaps there was
> an error launching the db server. In addition, sometimes the
> database cache can become corrupt, so another solution is to remove
> the "/Users/jianwu/.kepler/cache/cachedata/hsqldb" directory.
> [run] at
> org
> .kepler
> .util.DBConnectionFactory.getDBConnection(DBConnectionFactory.java:
> 126)
> [run] at
> org
> .kepler
> .util.DBConnectionFactory.getDBConnection(DBConnectionFactory.java:99)
> [run] at
> org
> .kepler
> .gui.KeplerInitializer.initializeSystem(KeplerInitializer.java:156)
> [run] at
> org.kepler.gui.KeplerInitializer.<init>(KeplerInitializer.java:92)
> [run] at
> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> [run] at
> sun
> .reflect
> .NativeConstructorAccessorImpl
> .newInstance(NativeConstructorAccessorImpl.java:39)
> [run] at
> sun
> .reflect
> .DelegatingConstructorAccessorImpl
> .newInstance(DelegatingConstructorAccessorImpl.java:27)
> [run] at
> java.lang.reflect.Constructor.newInstance(Constructor.java:513)
> [run] at java.lang.Class.newInstance0(Class.java:355)
> [run] at java.lang.Class.newInstance(Class.java:308)
> [run] at
> ptolemy
> .actor
> .gui
> .ConfigurationApplication
> .readConfiguration(ConfigurationApplication.java:446)
> [run] ... 16 more
>
> BUILD SUCCESSFUL
> Total time: 15 seconds
>
> --
>
> Best wishes
>
> Sincerely yours
>
> Jianwu Wang
> wangjianwu at gmail.com
>
> Post-Doctor
> Scientific Workflow Automation Technologies (SWAT) Laboratory
> San Diego Supercomputer Center University of California, San Diego
> San Diego, U.S.A.
>
> _______________________________________________
> Kepler-dev mailing list
> Kepler-dev at kepler-project.org
> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-dev
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