[kepler-users] Using NCBI Entrez web services

[Panickos Neophytou]

Hi Jianwu,

I searched for this but couldn't find something relevant. Maybe I'm
looking at the wrong place or just skipped it... Can you tell me the
exact name of the Actor I should be looking for?

Thanks,
Panickos

On Sun, Sep 13, 2009 at 11:42 PM, Jianwu Wang <jianwu at sdsc.edu> wrote:
> Hi Panickos,
>
>     There is a RESTful Service actor in Kepler trunk. You should be able to
> find it by searching 'Service'.
>
> Best wishes
>
> Sincerely yours
>
> Jianwu Wang
> jianwu at sdsc.edu
> http://users.sdsc.edu/~jianwu/
>
> Scientific Workflow Automation Technologies (SWAT) Laboratory
> San Diego Supercomputer Center
> University of California, San Diego
> San Diego, CA, U.S.A.
>
> Panickos Neophytou wrote:
>
> Thanks Daniel,
>
> I was wondering if there's any way to use the REST method, using just
> the URL with some query parameters. Is there an actor for doing this?
> And maybe have the query part of the URL be generated somehow by the
> upstream actors of the workflow...
>
> If this is not possible, then how long do you think it is going to
> take to fix the Web Service Actor? Should I pause this and wait for
> your update or should I try something different?
>
> Cheers,
> Panickos
>
> On Sat, Sep 12, 2009 at 9:42 PM, Daniel Crawl <crawl at sdsc.edu> wrote:
>
>
> Hi Panickos,
>
> I'm in the process of updating the web service actor to
> work with the NCBI web services. I'll let you know when
> I'm done.
>
>  --dan
>
>
>
> Panickos Neophytou wrote:
>
>
> Hi,
>
> I'm new to kepler and I was wondering if anyone has a sample workflow
> using eSearch and eFetch for some any of their databases. I tried a
> few thing and I also didn't find anything on the web about this.
>
> Thanks,
> Panickos
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