[kepler-dev] Kepler - dies unexpectedly

Mon Feb 2 08:31:19 PST 2009

Hi Michael
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=497547
indicates a possible solution of editing the libawt.so binary.

_Christopher

Norbert Podhorszki wrote:
> Hi Michael,
> 
> I tried to live together with glibc error messages for a while in the past
> on a Fedora 4 / java 1.5 combo. Moving to java 1.6 solved the problem for
> me. 
> I had no idea what was wrong.
> 
> Best regards
> Norbert
> 
> 
> 
> On 2/2/09 7:50 AM, "Michal Owsiak" <michalo at man.poznan.pl> wrote:
> 
>> Hello all,
>>
>> I am encountering strange issue while using Kepler.
>>
>> I am trying to create Kepler workflow that consists of various composite
>> actors. When I edit workflow Kepler application dies at various
>> situations: when I am opening workflow, when I try to move components,
>> when I select components at the workflow.
>>
>> Generally, it is not easy to reproduce the error - I have to play with
>> application for some time to get Kepler crashed.
>>
>> Please find stack trace attached.
>>
>> Best regards
>>
>> Michal Owsiak
>>
>> michalo at rhodiola:~/Kepler-1.0.0$ java -version
>> java version "1.5.0_16"
>> Java(TM) 2 Runtime Environment, Standard Edition (build 1.5.0_16-b02)
>> Java HotSpot(TM) Server VM (build 1.5.0_16-b02, mixed mode)
>> michalo at rhodiola:~/Kepler-1.0.0$ ./kepler.sh
>> Locking assertion failure.  Backtrace:
>> #0 /usr/lib/libxcb-xlib.so.0 [0x88600767]
>> #1 /usr/lib/libxcb-xlib.so.0(xcb_xlib_unlock+0x31) [0x886008b1]
>> #2 /usr/lib/libX11.so.6(_XReply+0xfd) [0x856591bd]
>> #3 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/xawt/libmawt.so
>> [0x859addce]
>> #4 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/xawt/libmawt.so
>> [0x85997d77]
>> #5 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/xawt/libmawt.so
>> [0x85997ef3]
>> #6
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/xawt/libmawt.so(Java_sun_awt
>> _X11GraphicsEnvironment_initDisplay+0x26)
>> [0x85998136]
>> #7 [0xb12d9008]
>> #8 [0xb12d2b6b]
>> #9 [0xb12d2b6b]
>> #10 [0xb12d0236]
>> #11 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/server/libjvm.so
>> [0xb76a9eec]
>> #12 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/server/libjvm.so
>> [0xb7879ae8]
>> #13 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/server/libjvm.so
>> [0xb76a9d1f]
>> #14
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/server/libjvm.so(JVM_DoPrivi
>> leged+0x32d)
>> [0xb770782d]
>> #15
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libjava.so(Java_java_securit
>> y_AccessController_doPrivileged__Ljava_security_PrivilegedAction_2+0x3d)
>> [0xb73b830d]
>> #16 [0xb12d8898]
>> #17 [0xb12d2a94]
>> #18 [0xb12d0236]
>> #19 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/server/libjvm.so
>> [0xb76a9eec]
>> Locking assertion failure.  Backtrace:
>> #0 /usr/lib/libxcb-xlib.so.0 [0x88600767]
>> #1 /usr/lib/libxcb-xlib.so.0(xcb_xlib_lock+0x2e) [0x8860081e]
>> #2 /usr/lib/libX11.so.6 [0x85658518]
>> #3 /usr/lib/libX11.so.6(XGetVisualInfo+0x26) [0x8564f0a6]
>> #4 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/xawt/libmawt.so
>> [0x859970b9]
>> #5 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/xawt/libmawt.so
>> [0x85997303]
>> #6 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/xawt/libmawt.so
>> [0x85997fa1]
>> #7
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/xawt/libmawt.so(Java_sun_awt
>> _X11GraphicsEnvironment_initDisplay+0x26)
>> [0x85998136]
>> #8 [0xb12d9008]
>> #9 [0xb12d2b6b]
>> #10 [0xb12d2b6b]
>> #11 [0xb12d0236]
>> #12 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/server/libjvm.so
>> [0xb76a9eec]
>> #13 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/server/libjvm.so
>> [0xb7879ae8]
>> #14 /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/server/libjvm.so
>> [0xb76a9d1f]
>> #15
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/server/libjvm.so(JVM_DoPrivi
>> leged+0x32d)
>> [0xb770782d]
>> #16
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libjava.so(Java_java_securit
>> y_AccessController_doPrivileged__Ljava_security_PrivilegedAction_2+0x3d)
>> [0xb73b830d]
>> #17 [0xb12d8898]
>> #18 [0xb12d2a94]
>> #19 [0xb12d0236]
>> /usr/share/themes/nimbus/gtk-2.0/gtkrc:13: Engine "nimbus" is
>> unsupported, ignoring
>> /usr/share/themes/nimbus/gtk-2.0/gtkrc:25: Engine "nimbus" is
>> unsupported, ignoring
>> Opening user preferences PtolemyPreferences.xml...
>> KAR Library directories: [/home/michalo/Kepler-1.0.0/kar/actors,
>> /home/michalo/Kepler-1.0.0/kar/directors]
>> regArray:
>> org.ecoinformatics.ecogrid.registry.stub.RegistryEntryArrayType at 1fd6c73a
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> ERROR
>> (org.ecoinformatics.seek.ecogrid.EcoGridServicesController:mergeServicesList:4
>> 14)
>> could not add service:The service type is invalid or null:
>> KeplerSlaveNode.  Couldn't be added to list
>> *** glibc detected *** java: double free or corruption (out): 0x81fee8e8 ***
>> ======= Backtrace: =========
>> /lib/tls/i686/cmov/libc.so.6[0xb7e8ea85]
>> /lib/tls/i686/cmov/libc.so.6(cfree+0x90)[0xb7e924f0]
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/server/libjvm.so[0xb787425c]
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/server/libjvm.so[0xb7610b73]
>> [0xb1302036]
>> [0xb12d3850]
>> [0xb12d2b6b]
>> [0xb12d2b6b]
>> [0xb12d2b6b]
>> [0xb132bdb4]
>> ======= Memory map: ========
>> 08048000-08057000 r-xp 00000000 08:05 1270621
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/bin/java
>> 08057000-08059000 rwxp 0000e000 08:05 1270621
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/bin/java
>> 08059000-0915e000 rwxp 08059000 00:00 0          [heap]
>> 76900000-769bb000 rwxp 76900000 00:00 0
>> 769bb000-76a00000 ---p 769bb000 00:00 0
>> 77eff000-77f02000 rwxp 77eff000 00:00 0
>> 77f02000-784ed000 rwxp 77f02000 00:00 0
>> 784ed000-78500000 ---p 784ed000 00:00 0
>> 785f8000-785fb000 rwxp 785f8000 00:00 0
>> 785fb000-78af9000 rwxp 785fb000 00:00 0
>> 7ae00000-7af00000 rwxp 7ae00000 00:00 0
>> 7d2ff000-7d302000 rwxp 7d2ff000 00:00 0
>> 7d302000-7d8f9000 rwxp 7d302000 00:00 0
>> 7d8f9000-7d900000 ---p 7d8f9000 00:00 0
>> 7d9f5000-7d9f8000 rwxp 7d9f5000 00:00 0
>> 7d9f8000-7def6000 rwxp 7d9f8000 00:00 0
>> 7f2fa000-7f2fd000 rwxp 7f2fa000 00:00 0
>> 7f2fd000-7f7fb000 rwxp 7f2fd000 00:00 0
>> 7f7fb000-7f7fe000 rwxp 7f7fb000 00:00 0
>> 7f7fe000-7fcfc000 rwxp 7f7fe000 00:00 0
>> 806fe000-80701000 rwxp 806fe000 00:00 0
>> 80701000-80bff000 rwxp 80701000 00:00 0
>> 80bff000-80c02000 ---p 80bff000 00:00 0
>> 80c02000-81123000 rwxp 80c02000 00:00 0
>> 81123000-81200000 ---p 81123000 00:00 0
>> 81200000-812fb000 rwxp 81200000 00:00 0
>> 812fb000-81300000 ---p 812fb000 00:00 0
>> 81300000-81400000 rwxp 81300000 00:00 0
>> 81400000-814fd000 rwxp 81400000 00:00 0
>> 814fd000-81500000 ---p 814fd000 00:00 0
>> 81500000-815ff000 rwxp 81500000 00:00 0
>> 815ff000-81600000 ---p 815ff000 00:00 0
>> 81600000-816fd000 rwxp 81600000 00:00 0
>> 816fd000-81700000 ---p 816fd000 00:00 0
>> 81700000-817fc000 rwxp 81700000 00:00 0
>> 817fc000-81800000 ---p 817fc000 00:00 0
>> 81800000-818fd000 rwxp 81800000 00:00 0
>> 818fd000-81900000 ---p 818fd000 00:00 0
>> 81900000-819fd000 rwxp 81900000 00:00 0
>> 819fd000-81a00000 ---p 819fd000 00:00 0
>> 81a00000-81afd000 rwxp 81a00000 00:00 0
>> 81afd000-81b00000 ---p 81afd000 00:00 0
>> 81b00000-81bfc000 rwxp 81b00000 00:00 0
>> 81bfc000-81c00000 ---p 81bfc000 00:00 0
>> 81c00000-81cfd000 rwxp 81c00000 00:00 0
>> 81cfd000-81d00000 ---p 81cfd000 00:00 0
>> 81d00000-81dfb000 rwxp 81d00000 00:00 0
>> 81dfb000-81e00000 ---p 81dfb000 00:00 0
>> 81e00000-81efe000 rwxp 81e00000 00:00 0
>> 81efe000-81f00000 ---p 81efe000 00:00 0
>> 81f00000-81ffb000 rwxp 81f00000 00:00 0
>> 81ffb000-82000000 ---p 81ffb000 00:00 0
>> 82000000-820fd000 rwxp 82000000 00:00 0
>> 820fd000-82100000 ---p 820fd000 00:00 0
>> 82100000-821fc000 rwxp 82100000 00:00 0
>> 821fc000-82200000 ---p 821fc000 00:00 0
>> 82300000-82400000 rwxp 82300000 00:00 0
>> 824fe000-82501000 ---p 824fe000 00:00 0
>> 82501000-829ff000 rwxp 82501000 00:00 0
>> 829ff000-82a02000 ---p 829ff000 00:00 0
>> 82a02000-830fa000 rwxp 82a02000 00:00 0
>> 830fa000-83100000 ---p 830fa000 00:00 0
>> 83100000-83300000 rwxp 83100000 00:00 0
>> 83300000-83400000 rwxp 83300000 00:00 0
>> 834ff000-83502000 ---p 834ff000 00:00 0
>> 83502000-83afb000 rwxp 83502000 00:00 0
>> 83afb000-83b00000 ---p 83afb000 00:00 0
>> 83b00000-83c00000 rwxp 83b00000 00:00 0
>> 83c00000-83ce8000 rwxp 83c00000 00:00 0
>> 83ce8000-83d00000 ---p 83ce8000 00:00 0
>> 83dff000-83e02000 ---p 83dff000 00:00 0
>> 83e02000-843e2000 rwxp 83e02000 00:00 0
>> 843e2000-84400000 ---p 843e2000 00:00 0
>> 8441f000-84473000 r-xp 00000000 08:05 1231855
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libcmm.so
>> 84473000-84476000 rwxp 00053000 08:05 1231855
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libcmm.so
>> 84476000-8448b000 r-xp 00000000 08:05 1231848
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jre/lib/i386/libdcpr.so
>> 8448b000-8449e000 rwxp 00014000 08:05 1231848
>> /usr/lib/jvm/java-1.5.0-sun-1.5.0.16/jreAborted
>>
> 
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-- 
Christopher Brooks (cxh at eecs berkeley edu) University of California
CHESS Executive Director                      US Mail: 337 Cory Hall
Programmer/Analyst CHESS/Ptolemy/Trust        Berkeley, CA 94720-1774
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