[seek-logistics] Data Integration in the Life Sciences, San Diego, July 20-22
Bertram Ludaescher
ludaesch at ucdavis.edu
Fri Jun 17 13:21:25 PDT 2005
[[ Note:
1. The technical program below!
2. The upcoming early bird registration deadline ...
3. The time and location (think "beaches are not far" ;-)
4. And please forward to other interested parties!!! ]]
--
Bertram Ludaescher
Dept of Computer Science & UC Davis Genome Center
University of California, Davis
One Shields Avenue, Davis, CA 95616
Call for PARTICIPATION
-------------------------------------------------
2nd International Workshop on
Data Integration in the Life Sciences (DILS 2005)
University of California, San Diego
July 20 - 22, 2005
http://www.sdsc.edu/dils05/
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*** EARLY BIRD REGISTRATION ENDS June 30 ***
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* KEYNOTE TALKS (http://www.syncenter.org/dils2005/Keynote_Speakers):
- "Curated Databases", Peter Buneman, School of Informatics and
Digital Curation Centre, University of Edinburgh
- "Challenges in Biological Data Integration in the Post-Genome
Sequence Era", Shankar Subramaniam, Department of Bioengineering and
San Diego Supercomputer Center, UC San Diego
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--------------------Wednesday 4pm, July 20, 2005----------------------
* DILS OPENING
- Challenges in Providing Long Lived Integrated Information Resources
for Biologists, Susan Baxter (Natl. Center for Genome Resources)
- Eco-Informatics for Decision Makers: Advancing a Research Agenda,
Judy Cushing (Evergreen College), Tyrone Wilson (USGS)
* POSTER BRIEFINGS & SESSION and RECEPTION
- Support for BioIndexing in BLASTgres, Ruey-Lung Hsiao, D. Stott
Parker, Hung-chih Yang
- An Environment to Define and Execute In-Silico Workflows Using Web
Services, Rafael Targino, Maria Claudia Cavalcanti, Marta Mattoso
- Web Service Mining for Biological Pathway Discovery, George Zheng,
Athman Bouguettaya
- SemanticBio: building conceptual scientific workflows over web
services, Zoe Lacroix, Hervé Ménager
- PLATCOM: Current Status and Plan for the Next Stages, Kwangmin Choi,
Jeong-Hyeon Choi, Sun Kim, Amit Saple, Zhiping Wang, Jason Lee
- Integration of Interaction Databases Using Web Services, Seong Joon Yoo
- Collaborative Curation of Data from Bio-medical Texts and Abstracts
and its integration, Chitta Baral, Hasan Davulcu, Mutsumi Nakamura,
Prabhdeep Singh, Luis Tari, Lian Yu
- Towards the paradigm of an ontology-based user interface: from
simple knowledge maps to graphical query language, Serguei Krivov,
Ferdinando Villa
--------------------Thursday July 21, 2005----------------------------
* KEYNOTE: Challenges in Biological Data Integration in the
Post-Genome Sequence Era, Shankar Subramaniam (UCSD)
* USER APPLICATIONS
- A User-centric Framework for Accessing Biological Sources and Tools,
Sarah Cohen-Boulakia, Susan Davidson, Christine Froidevaux
- BioLog: A Browser Based Collaboration and Resource Navigation
Assistant for BioMedical Researchers, Prabhdeep Singh, Ravi
Bhimavarapu, Hasan Davulcu, Chitta Baral, Seungchan Kim, Huan Liu,
Mike Bittner, I.V. Ramakrishnan
- Learning Layouts of Biological Datasets Semi-Automatically, Kaushik
Sinha, Xuan Zhang, Ruoming Jin, Gagan Agrawal
* ONTOLOGIES
- Factors affecting ontology development in ecology, C. Maria Keet
- Querying ontologies in relational database systems, Silke Trissl, Ulf Leser
- Scientific names are ambiguous as identifiers for biological taxa:
their context and definition are required for accurate data
integration, Jessie Kennedy, Trevor Paterson, Robert Kukla
* DATA INTEGRATION I
- Integrating Heterogeneous Microarray Data Sources Using Correlation
Signatures, Jaewoo Kang, Jiong Yang, Wanhong Xu, Pankaj Chopra
- Knowledge-Based Integrative Framework for Hypothesis Formation in
Biochemical Networks, Nam Tran, Chitta Baral, Vinay Nagaraj, Lokesh
Joshi
* CONFERENCE DINNER
--------------------Friday July 22, 2005------------------------------
* KEYNOTE, Curated Databases, Peter Buneman (University of Edinburgh)
* DATA INTEGRATION II
- The Multiple Roles of Ontologies in the BioMediator Data Integration
System, Peter Mork, Ron Shaker, Peter Tarczy-Hornoch
- Semantic Correspondence in Federated Life Science Data Integration
Systems, Malika Mahoui, Harshad Kulkarni, Nianhua Li, Zina Ben-Miled,
Katy Borner
- An architecture and application for integrating curation data at the
residue level for proteins, Mehmet Dalkilic
- The Biozon system for complex analysis of heterogeneous interrelated
biological data and discovery of emergent structures, Golan Yona,
Aaron Birkland
* PROJECT UPDATES/DEMONSTRATIONS:
- BIRN: The Metropolis Mediator System, Vadim Astakhov (UCSD) et al.
- SEEK: Data Integration and Workflow Solutions for Ecology, William
Michener (American Institute of Biological Sciences, LTER) et al.
* DATA INTEGRATION III
- Assigning Unique Keys to Chemical Compounds for data integration:
some interesting counterexamples, Greeshma Neglur, Robert Grossman,
Bing Liu
- Integrating and Warehousing Liver Gene Expression Data and Related
Biomedical Resources in GEDAW, Emilie Guérin, Gwenaelle Marquet,
Anita Burgun, Olivier Loréral, Laure Berti-Equille, Ulf Leser,
Fouzia Moussouni
- Information Integration and Knowledge Acquisition from Semantically
Heterogeneous Biological Data Sources, Doina Caragea, Jyotishman
Pathak, Jie Bao, Adrian Silvescu, Andorf Carson, Drena Dobbs, Vasant
Honavar
* POTPOURRI
- Building a Generic Platform for Medical Screening Applications based
on Domain Specific Modeling and Process Orientation, Stefan Jablonski,
Rainer Lay, Sascha Mueller, Christian Meiler, Matthias Faerber, Victor
Derhartunian, Georg Michelson
- Automatic Generation of Data Types for Classification of DeepWeb
Sources,David Buttler, Terence Critchlow, Anne Ngu
- BioNavigation: Selecting Optimum Paths through Biological Resources
to Evaluate Ontological Navigational Queries, Zoe Lacroix, Kaushal
Parekh, Maria-Esther Vidal, Marelis Cardenas, Natalia Marquez
* DATA INTEGRATION IV
- Cluster based Integration of Heterogeneous Biological Databases
using the AutoMed toolkit, Michael Maibaum, Lucas Zamboulis, Galia
Rimon, Nigel Martin, Alexandra Poulovassilis
- Hybrid Integration of Molecular-biological Annotation Data, Toralf
Kirsten, Hong-Hai Do, Christine Körner, Erhard Rahm
- Automatic Annotation of Metabolomic Mass Spectra, Oliver Fiehn, Gert
Wohlgemuth, Martin
- Performance-Oriented Privacy-Preserving Data Integration, Raymond
Pon, Terence Critchlow
* PANEL & CONCLUDING REMARKS
- The Electronic Health Record of the Future: Integrating Molecular
Information
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REGISTRATION FEES:
Industrial/Academic/Student: $200/$175/$100 (before July 1st)
Industrial/Academic/Student: $250/$220/$150 (after July 1st)
See: https://support.sdsc.edu/register/dils05/
----------------------------------------------------------------------
DILS gratefully acknowledges support from our sponsors:
Microsoft Research, American Medical Informatics Association (AMIA),
UC Davis Genome Center, U Maryland Center for Bioinformatics &
Computational Biology, San Diego Supercomputer Center, UC San Diego
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