[eml-cvs] eml eml-methods.xsd
David Blankman
dblankman at lternet.edu
Fri Sep 20 10:07:34 PDT 2002
Thanks for the info.
I'll take care of fixing them.
David
Chad Berkley wrote:
>Hi David,
>
>Will you take a look at the files you have checked in in the last two days
>and fix the module documentation and license. JTidy screws up the spacing
>and indentation, so you just need to paste in the correct format from
>another file. Note that you don't have to fill in any of the CVS tags
>(the parts that start with $) as CVS will fill them in correctly for you.
>
>chad
>
>On Fri, 20 Sep 2002, David Blankman LTER KDI Project wrote:
>
>
>
>>blankman 02/09/20 08:56:02
>>
>> Modified: . eml-methods.xsd
>> Log:
>> eml-methods documentation changes
>>
>> Revision Changes Path
>> 1.9 +131 -106 eml/eml-methods.xsd
>>
>> Index: eml-methods.xsd
>> ===================================================================
>> RCS file: /cvs/eml/eml-methods.xsd,v
>> retrieving revision 1.8
>> retrieving revision 1.9
>> diff -u -r1.8 -r1.9
>> --- eml-methods.xsd 16 Sep 2002 22:04:48 -0000 1.8
>> +++ eml-methods.xsd 20 Sep 2002 15:56:02 -0000 1.9
>> @@ -1,16 +1,16 @@
>> <?xml version="1.0" encoding="UTF-8"?>
>> <xs:schema targetNamespace="eml://ecoinformatics.org/methods-2.0.0rc1"
>> - xmlns="eml://ecoinformatics.org/methods-2.0.0rc1"
>> - xmlns:res="eml://ecoinformatics.org/resource-2.0.0rc1"
>> - xmlns:cit="eml://ecoinformatics.org/literature-2.0.0rc1"
>> - xmlns:ds="eml://ecoinformatics.org/dataset-2.0.0rc1"
>> - xmlns:cov="eml://ecoinformatics.org/coverage-2.0.0rc1"
>> - xmlns:rp="eml://ecoinformatics.org/party-2.0.0rc1"
>> - xmlns:pro="eml://ecoinformatics.org/protocol-2.0.0rc1"
>> - xmlns:sw="eml://ecoinformatics.org/software-2.0.0rc1"
>> - xmlns:xs="http://www.w3.org/2001/XMLSchema"
>> - xmlns:doc="eml://ecoinformatics.org/documentation-2.0.0rc1"
>> - xmlns:txt="eml://ecoinformatics.org/text-2.0.0rc1">
>> +xmlns="eml://ecoinformatics.org/methods-2.0.0rc1"
>> +xmlns:res="eml://ecoinformatics.org/resource-2.0.0rc1"
>> +xmlns:cit="eml://ecoinformatics.org/literature-2.0.0rc1"
>> +xmlns:ds="eml://ecoinformatics.org/dataset-2.0.0rc1"
>> +xmlns:cov="eml://ecoinformatics.org/coverage-2.0.0rc1"
>> +xmlns:rp="eml://ecoinformatics.org/party-2.0.0rc1"
>> +xmlns:pro="eml://ecoinformatics.org/protocol-2.0.0rc1"
>> +xmlns:sw="eml://ecoinformatics.org/software-2.0.0rc1"
>> +xmlns:xs="http://www.w3.org/2001/XMLSchema"
>> +xmlns:doc="eml://ecoinformatics.org/documentation-2.0.0rc1"
>> +xmlns:txt="eml://ecoinformatics.org/text-2.0.0rc1">
>> <xs:import namespace="eml://ecoinformatics.org/documentation-2.0.0rc1"
>> schemaLocation="eml-documentation.xsd" />
>> <xs:import namespace="eml://ecoinformatics.org/dataset-2.0.0rc1"
>> @@ -22,39 +22,25 @@
>> <xs:import namespace="eml://ecoinformatics.org/protocol-2.0.0rc1"
>> schemaLocation="eml-protocol.xsd" />
>> <xs:annotation>
>> - <xs:documentation>
>> - '$RCSfile: eml-methods.xsd,v $'
>> - Copyright: 1997-2002 Regents of the University of California,
>> - University of New Mexico, and
>> - Arizona State University
>> - Sponsors: National Center for Ecological Analysis and Synthesis and
>> - Partnership for Interdisciplinary Studies of Coastal Oceans,
>> - University of California Santa Barbara
>> - Long-Term Ecological Research Network Office,
>> - University of New Mexico
>> - Center for Environmental Studies, Arizona State University
>> - Other funding: National Science Foundation (see README for details)
>> - The David and Lucile Packard Foundation
>> - For Details: http://knb.ecoinformatics.org/
>> -
>> - '$Author: berkley $'
>> - '$Date: 2002/09/16 22:04:48 $'
>> - '$Revision: 1.8 $'
>> -
>> - This program is free software; you can redistribute it and/or modify
>> - it under the terms of the GNU General Public License as published by
>> - the Free Software Foundation; either version 2 of the License, or
>> - (at your option) any later version.
>> -
>> - This program is distributed in the hope that it will be useful,
>> - but WITHOUT ANY WARRANTY; without even the implied warranty of
>> - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
>> - GNU General Public License for more details.
>> -
>> - You should have received a copy of the GNU General Public License
>> - along with this program; if not, write to the Free Software
>> - Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
>> - </xs:documentation>
>> + <xs:documentation>'$RCSfile: eml-methods.xsd,v $' Copyright: 1997-2002
>> + Regents of the University of California, University of New Mexico, and
>> + Arizona State University Sponsors: National Center for Ecological Analysis
>> + and Synthesis and Partnership for Interdisciplinary Studies of Coastal
>> + Oceans, University of California Santa Barbara Long-Term Ecological
>> + Research Network Office, University of New Mexico Center for Environmental
>> + Studies, Arizona State University Other funding: National Science
>> + Foundation (see README for details) The David and Lucile Packard Foundation
>> + For Details: http://knb.ecoinformatics.org/ '$Author: blankman $' '$Date:
>> + 2002/09/16 22:04:48 $' '$Revision: 1.9 $' This program is free software;
>> + you can redistribute it and/or modify it under the terms of the GNU General
>> + Public License as published by the Free Software Foundation; either version
>> + 2 of the License, or (at your option) any later version. This program is
>> + distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
>> + without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
>> + PARTICULAR PURPOSE. See the GNU General Public License for more details.
>> + You should have received a copy of the GNU General Public License along
>> + with this program; if not, write to the Free Software Foundation, Inc., 59
>> + Temple Place, Suite 330, Boston, MA 02111-1307 USA</xs:documentation>
>> <xs:appinfo>
>> <doc:moduleDocs>
>> <doc:moduleName>eml-methods</doc:moduleName>
>> @@ -113,10 +99,10 @@
>> <xs:element name="sampling" minOccurs="0">
>> <xs:annotation>
>> <xs:appinfo>
>> - <doc:tooltip>Description of sampling methods.</doc:tooltip>
>> - <doc:summary>Description of sampling methods including the
>> - "coverage" of the study, a description of the sampling procedures,
>> - and the spatial sampling units.</doc:summary>
>> + <doc:tooltip>sampling methods</doc:tooltip>
>> + <doc:summary>Description of sampling procedures including the
>> + geographic, temporal and taxonomic coverage of the
>> + study.</doc:summary>
>> <doc:description>See individual elements for more detailed
>> descriptions.</doc:description>
>> <doc:lineage>Modification of the sampling element introduced into
>> @@ -130,34 +116,38 @@
>> <xs:appinfo>
>> <doc:tooltip>Geographic, temporal, taxonomic
>> coverage</doc:tooltip>
>> - <doc:summary>A description of the specific areas sampled
>> - (geographic coverage) and the sampling frequency (temporal
>> - coverage).</doc:summary>
>> - <doc:description>A "studyExtent" represents both a specific
>> - sampling area and the sampling frequency (temporal
>> + <doc:summary>A description of the geographic area sampled
>> + (geographic coverage), the sampling frequency (temporal
>> + coverage), and living organisms sampled (taxonomic
>> + coverage.</doc:summary>
>> + <doc:description>The field studyExtent represents both a
>> + specific sampling area and the sampling frequency (temporal
>> boundaries, frequency of occurrence). The geographic
>> - "studyExtent" is usually a surrogate (representative area of)
>> + studyExtent is usually a surrogate (representative area of)
>> for the larger area documented in the "studyAreaDescription".
>> - The "studyExtent" can be entered either in non-structured
>> - textual form or using the structure of the "coverage"
>> + The studyExtent can be entered either in non-structured
>> + textual form or using the structure of the coverage
>> element.</doc:description>
>> <doc:lineage>New in EML 2.0.0</doc:lineage>
>> </xs:appinfo>
>> </xs:annotation>
>> <xs:complexType>
>> <xs:choice maxOccurs="unbounded">
>> - <xs:element name="coverage" />
>> + <xs:element name="coverage" type="cov:Coverage" />
>> <xs:element name="description" type="txt:TextType">
>> <xs:annotation>
>> <xs:appinfo>
>> <doc:tooltip>Text description of the
>> coverage</doc:tooltip>
>> <doc:summary>A textual description of the specific
>> - areas sampled (geographic coverage) and the sampling
>> - frequency (temporal coverage).</doc:summary>
>> - <doc:description>A textual description of the specific
>> - sampling area and the sampling frequency (temporal
>> - boundaries, frequency of occurrence).</doc:description>
>> + areas sampled (geographic coverage), the sampling
>> + frequency (temporal coverage), and groups of living
>> + organisms sampled (taxonomic coverage).</doc:summary>
>> + <doc:description>The coverage field allows for a
>> + textual description of the specific sampling area, the
>> + sampling frequency (temporal boundaries, frequency of
>> + occurrence), and groups of living organisms sampled
>> + (taxonomic coverage).</doc:description>
>> <doc:example>The study was conducted on the North
>> Platte River, starting 6 miles downstream and ending 9
>> miles downstream of the route 132 bridge in Evanston,
>> @@ -175,11 +165,12 @@
>> <doc:tooltip>Sampling methods and procedures</doc:tooltip>
>> <doc:summary>A description of sampling methods and
>> procedures</doc:summary>
>> - <doc:description>This element allows for a text-based/human
>> - readable description of the sampling procedures used in the
>> - research project. The content of this element would be
>> - similar to a description of sampling procedures found in the
>> - methods section of a journal article.</doc:description>
>> + <doc:description>The samplingDescription field allows for a
>> + text-based/human readable description of the sampling
>> + procedures used in the research project. The content of this
>> + element would be similar to a description of sampling
>> + procedures found in the methods section of a journal
>> + article.</doc:description>
>> </xs:appinfo>
>> </xs:annotation>
>> </xs:element>
>> @@ -187,25 +178,26 @@
>> <xs:annotation>
>> <xs:appinfo>
>> <doc:tooltip>Spatial sampling units</doc:tooltip>
>> - <doc:summary>Spatial sampling units represent the "plot"
>> + <doc:summary>Spatial sampling units represent the plots
>> sampled.</doc:summary>
>> <doc:description>A spatial sampling unit describes the
>> - specific geographic areas sampled. For example, if a
>> - researcher places a single light source at a specific point
>> - in a research location in order to attract insects to derive
>> - an estimate of the insect population, then the sampling unit
>> - is the area illuminated by the light source (in actual
>> - practice there might be multiple sampling unit in this case
>> - since different species have different attraction rates). A
>> - sampling unit may also be seen as the bounding box of a
>> - specific 3-meter square "plot". In the case of a study in
>> - which the measurements from several disbursed "point
>> - collection" devices are aggregated, then the sampling unit
>> + specific geographic areas sampled. In the case of a study in
>> + which the measurements from several disbursed point
>> + collection devices are aggregated, then the sampling unit
>> would be the area of that aggregation. Spatial sampling units
>> - can either be described by reference to a "coverage"
>> - description or by reference to the values in a data table
>> - (usually a GIS layer)</doc:description>
>> - <doc:example>x</doc:example>
>> + can either be described by filling out the structured
>> + coverage element or by reference to the values in a data
>> + table (usually a GIS layer)</doc:description>
>> + <doc:example>If a researcher places a single light source at
>> + a specific point in a research location in order to attract
>> + insects to derive an estimate of the insect population, then
>> + the sampling unit is the area illuminated by the light source
>> + (in actual practice there might be multiple sampling units in
>> + this case since different species have different attraction
>> + rates).</doc:example>
>> + <doc:example>The bounding box of a specific 3-meter square
>> + plot.</doc:example>
>> + <doc:example>The location of a weather station.</doc:example>
>> <doc:lineage>New in EML 2.0.0</doc:lineage>
>> </xs:appinfo>
>> </xs:annotation>
>> @@ -216,23 +208,30 @@
>> <xs:appinfo>
>> <doc:tooltip>The identifier of a spatial sampling
>> entity.</doc:tooltip>
>> - <doc:summary>The identifier of a entity described in
>> - the "entity" module. This is usually a GIS
>> + <doc:summary>The identifier of an entity described in
>> + the entity module. This is usually a GIS
>> layer.</doc:summary>
>> - <doc:description>A value of a "referencedEntityId"
>> - element is reference to the identifier of the "entity"
>> + <doc:description>A value of a referencedEntityId
>> + element is a reference to the identifier of the entity
>> module that provides the metadata for a data table
>> - (RDBMS, GIS or "ascii" text) that has the actual
>> - spatial sampling unit values. The "referencedEntityId"
>> - is an indirect pointer to the actual values. The
>> - "referencedEntityId" can be thought of as a "foreign
>> - key" in a relational database.</doc:description>
>> + (RDBMS, GIS or ascii text) that has the actual spatial
>> + sampling unit values. The referencedEntityId field is
>> + an indirect pointer to the actual values. The
>> + referencedEntityId can be thought of as a foreign key
>> + in a relational database.</doc:description>
>> <doc:example>x</doc:example>
>> <doc:lineage>New in EML 2.0.0</doc:lineage>
>> </xs:appinfo>
>> </xs:annotation>
>> </xs:element>
>> <xs:element name="coverage" type="cov:GeographicCoverage" />
>> + <xs:annotation>
>> + <xs:appinfo>
>> + <doc:tooltip>sampling unit location</doc:tooltip>
>> + <doc:summary>Structured description of each sampling unit
>> + location</doc:summary>
>> + </xs:appinfo>
>> + </xs:annotation>
>> </xs:choice>
>> </xs:complexType>
>> </xs:element>
>> @@ -253,10 +252,10 @@
>> quality of data resulting from the associated method step. A
>> quality control description should identifiy a quality goal and
>> describe prescriptive steps taken to ensure that the data meet
>> - those standards or to postcriptive steps taken to assess the extent
>> - to which they are met. A quality ccontrol statement is associated
>> - with the methodStep that could have affected the targeted quality
>> - goal.</doc:description>
>> + those standards and/or postscriptive steps taken to assess the
>> + extent to which they are met. A quality control statement is
>> + associated with the methodStep that could have affected the
>> + targeted quality goal.</doc:description>
>> <doc:lineage>As of EML 2.0.0</doc:lineage>
>> </xs:appinfo>
>> </xs:annotation>
>> @@ -271,12 +270,16 @@
>> <xs:appinfo>
>> <doc:tooltip>Methods description</doc:tooltip>
>> <doc:summary>Description of the methods employed in collecting or
>> - generating a data set or other resource.</doc:summary>
>> - <doc:description>The description field allows for repeated
>> - text that describes the methodology for
>> - a project, experiment, or particular data table. Likewise, a
>> - literature citation may be provided that describes the
>> - methodology that was employed.</doc:description>
>> + generating a data set or other resource or in quality control and
>> + assurance.</doc:summary>
>> + <doc:description>The description field allows for repeated text
>> + that describes the methodology for a project, experiment, or
>> + particular data table or to describe the steps taken to control
>> + or assure the quality of the data. Likewise, a literature
>> + citation may be provided that describes the methodology that was
>> + employed. Or the information my be provided by either referencing
>> + a protocol resource or entering the structured protocol
>> + information</doc:description>
>> <doc:example><para> 1.Collect tissues from algae of
>> interest. </para> <para> a.We are currently
>> collecting Egregia menziezii, Mazzaella splendens, M. flaccida,
>> @@ -293,8 +296,30 @@
>> </xs:annotation>
>> </xs:element>
>> <xs:choice maxOccurs="unbounded">
>> - <xs:element name="citation" type="cit:CitationType" />
>> + <xs:element name="Citation" type="cit:CitationType" />
>> + <xs:annotation>
>> + <xs:appinfo>
>> + <doc:tooltip>citation</doc:tooltip>
>> + <doc:summary>Literature citation relating to the methods
>> + used.</doc:summary>
>> + <doc:description>The citation field allows to either reference a
>> + literature resource or enter structured literature
>> + information</doc:description>
>> + </xs:appinfo>
>> + </xs:annotation>
>> <xs:element name="protocol" type="pro:ProtocolType" />
>> + <xs:annotation>
>> + <xs:appinfo>
>> + <doc:tooltip>Protocol</doc:tooltip>
>> + <doc:summary>Protocol description relating to the methods
>> + used.</doc:summary>
>> + <doc:description>The protocol field is used to either reference a
>> + protocol resource or describe methods and identify the proccesses
>> + that have been used to define / improve the quality of a data
>> + file, also used to identify potential problems with the data
>> + file.</doc:description>
>> + </xs:appinfo>
>> + </xs:annotation>
>> </xs:choice>
>> </xs:choice>
>> <xs:element name="instrumentation" type="xs:string" minOccurs="0"
>> @@ -305,9 +330,9 @@
>> <doc:summary>Instruments used for measurement and recording
>> data.</doc:summary>
>> <doc:description>The Instrumentation field allows the description
>> - of any instruments used in the data collection. The description
>> - should include vendor, model number, optional equipment,
>> - etc.</doc:description>
>> + of any instruments used in the data collection or quality control
>> + and quality assurance. The description should include vendor, model
>> + number, optional equipment, etc.</doc:description>
>> <doc:example>LACHAT analyzer, model XYX.</doc:example>
>> <doc:lineage>New in EML 2.0</doc:lineage>
>> </xs:appinfo>
>>
>>
>>
>>_______________________________________________
>>eml-cvs mailing list
>>eml-cvs at ecoinformatics.org
>>http://www.ecoinformatics.org/mailman/listinfo/eml-cvs
>>
>>
>>
>
>
>
--
David E. Blankman
Database Integration Developer
Long Term Ecological Research Network Office
University of New Mexico
801 University, SE #104
Albuquerque, NM 87106
(505) 272-7346 / (505) 272-7080 FAX
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