<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><br></div><div>Adding new paths to the environment.plist solves the problems below. My file now looks like this:</div><div><br></div><div><div>{</div><div> PATH = "$PATH:/usr/local/Cellar/r/2.14.0/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin";</div><div>}</div></div><div><br></div><div>It seems to me, that the beginning ($PATH) is not understood by the execution of environment.plist, so that I had to copy from the terminal what is given with </div><div>> echo $PATH </div><div>and then copy paste it to the environment.plist</div><div><br></div><div>Cheers, Karin.</div><div><br></div><br><div><div>On Feb 6, 2012, at 14:18 PM, Karin Nadrowski Leipzig wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><br></div><div>Unfortunately manipulating the environment.plist screws up a whole lot other applications, including my Aquamacs - R functioning (X11 does not start, the help does not start), and the Word Plugin of Mendeley (it does not execute). </div><div><br></div><div>There is a web page saying that environment.plist does not work with applications launched from spotlight, this applies to all applications launched from the application folder also, I guess. </div><div><br></div><div><a href="http://www.digitaledgesw.com/node/31">http://www.digitaledgesw.com/node/31</a></div><div><br></div><div>So the solution given so far does not work for me. As soon as I rename the environment.plist file, the other software are functioning fine again.</div><div><br></div><div>Best, Karin.</div><div><br></div><br><div><div>On Jan 26, 2012, at 10:08 AM, Karin Nadrowski wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Dear Jing,<br><br>thanks, it's running now.<br><br>I used the following commands, as I'm not so fluent with vim:<br>$>mkdir .MacOSX<br>$>touch .MacOSX/environment.plist<br>$>pico .MacOSX/environment.plist<br><br>Not sure, where to send the mail so that it reaches the archive for others<br>to read.<br><br>Best, Karin.<br><br><br>-----Ursprüngliche Nachricht-----<br>Von: tao [mailto:tao@nceas.ucsb.edu]<br>Gesendet: Thursday, January 26, 2012 2:09 AM<br>An: <a href="mailto:barseghian@nceas.ucsb.edu">barseghian@nceas.ucsb.edu</a><br>Cc: Karin Nadrowski Leipzig; <a href="mailto:kepler-users@kepler-project.org">kepler-users@kepler-project.org</a><br>Betreff: Re: [kepler-users] Installing Kepler on Lion: finding R<br><br>Hi, Karin:<br><br>How did you add the path of the R to the PATH variable? By modifying the<br>.bash_profile? If you had done this way, it would not work.<br><br>Since OS X windows applications receive environment variables from the<br>your environment.plist file, you have to set the R path to PATH in<br>~/.MacOSX/environment.plist file in order to let Kepler know the R.<br><br>If you don't have the ~/.MacOSX/environment.plist file, you may open a<br>terminal and type:<br>$>mkdir .MacOSX<br>$>touch .MacOSX/environment.plist<br>$>vim .MacOSX/environment.plist<br>Paste the following lines to the file:<br><br>{<br> PATH = "$PATH:your_R_bin_dir";<br>}<br><br>If you already have ~/.MacOSX/environment.plist, you may type:<br>$>open .MacOSX/environment.plist<br>In the editor interface, set variable(key) PATH with the value of<br>$PATH:your_R_bin_dir.<br><br>Note: please replace your_R_bin_dir by the real value.<br><br>More information about editing environment.plist, please see:<br><a href="http://developer.apple.com/qa/qa2001/qa1067.html">http://developer.apple.com/qa/qa2001/qa1067.html</a><br><br>After saving the file, you must restart your computer. Then it should<br>work.<br><br>Thanks,<br><br>Jing<br><br><a href="mailto:barseghian@nceas.ucsb.edu">barseghian@nceas.ucsb.edu</a> wrote:<br><blockquote type="cite">I'm seeing this too.<br></blockquote><blockquote type="cite">We'll try to look into it and get a fix out soon.<br></blockquote><blockquote type="cite">Thanks for reporting it,<br></blockquote><blockquote type="cite">Derik<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">On Tue, 24 Jan 2012 22:16:24 +0100, Karin Nadrowski Leipzig<br></blockquote><blockquote type="cite"><<a href="mailto:nadrowski@uni-leipzig.de">nadrowski@uni-leipzig.de</a>> wrote:<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><blockquote type="cite">Hello,<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">has anyone experienced problems with installing Kepler on Lion? I have<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">installed Keppler 2.3 and 2.2. Added the path to R to the PATH<br></blockquote></blockquote>variable.<br><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite">R<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><blockquote type="cite">is running from the terminal. I'm using R regularly on the computer.<br></blockquote></blockquote>But<br><blockquote type="cite"><blockquote type="cite">Kepler cannot find it.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Thanks, Karin.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">_______________________________________________<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Kepler-users mailing list<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><a href="mailto:Kepler-users@kepler-project.org">Kepler-users@kepler-project.org</a><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><a href="http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users">http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users</a><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite">_______________________________________________<br></blockquote><blockquote type="cite">Kepler-users mailing list<br></blockquote><blockquote type="cite"><a href="mailto:Kepler-users@kepler-project.org">Kepler-users@kepler-project.org</a><br></blockquote><blockquote type="cite"><a href="http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users">http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users</a><br></blockquote><blockquote type="cite"><br></blockquote><br></div></blockquote></div><br><div apple-content-edited="true">
<div><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><span class="Apple-style-span" style="font-family: Helvetica, Arial, sans-serif; font-size: 13px; "><pre _mce_style="font-family: Helvetica,Arial,sans-serif; font-size: 13px;" style="font-family: Helvetica, Arial, sans-serif; font-size: 13px; ">-----------------------------
Dr. Karin Nadrowski
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Institut Biologie I - Special Botany and Functional Biodiversity; University of Leipzig; Johannisallee 21-23; 04103 Leipzig; Room 130; phone (0049) 341 - 97-38576; fax (0049) 341 - 97-38549; mobile (0049) 163 8640108; <a href="mailto:nadrowski@uni-leipzig.de">nadrowski@uni-leipzig.de</a>; <a href="http://alfresco.uni-leipzig.de/spezbot/~nadrowski">http://alfresco.uni-leipzig.de/spezbot/~nadrowski</a></pre></span><div><br></div></div></div></span><br class="Apple-interchange-newline"></div><br class="Apple-interchange-newline"></div><br class="Apple-interchange-newline">
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<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><span class="Apple-style-span" style="font-family: Helvetica, Arial, sans-serif; font-size: 13px; "><pre _mce_style="font-family: Helvetica,Arial,sans-serif; font-size: 13px;" style="font-family: Helvetica, Arial, sans-serif; font-size: 13px; ">-----------------------------
Dr. Karin Nadrowski
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Institut Biologie I - Special Botany and Functional Biodiversity; University of Leipzig; Johannisallee 21-23; 04103 Leipzig; Room 130; phone (0049) 341 - 97-38576; fax (0049) 341 - 97-38549; mobile (0049) 163 8640108; <a href="mailto:nadrowski@uni-leipzig.de">nadrowski@uni-leipzig.de</a>; <a href="http://alfresco.uni-leipzig.de/spezbot/~nadrowski">http://alfresco.uni-leipzig.de/spezbot/~nadrowski</a></pre></span><div><br></div></div></div></span><br class="Apple-interchange-newline"></div><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline">
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