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</o:shapelayout></xml><![endif]--></head><body lang=PT link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Sorry<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>I have forgotten to send my answer to the kepler-users list <o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><div><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal><b><span lang=EN-US style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span lang=EN-US style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> Luís Assunção [mailto:lass@isel.ipl.pt] <br><b>Sent:</b> quinta-feira, 27 de Janeiro de 2011 20:19<br><b>To:</b> 'Matt Jones'<br><b>Subject:</b> RE: [kepler-users] R installation for Kepler 1.0.0 on Windows (bis)<o:p></o:p></span></p></div></div><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Hi John<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>As Matt said I think your problem is Windows Path.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>I have Kepler 1.0 and later I installed a more recent R version (R 2.12.1) and I can run well Kepler demos with R actors.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Try to call R in a command line (in start make cmd) and execute “set” command to see the environment that Kepler will use when it start.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>You should see in Path variable something like Path=C:\Program Files\......; …….;C:\Program Files\R\R-2.12.1\bin;……;…..<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>I am hoping to help you.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Luis Assuncao<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal><b><span lang=EN-US style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span lang=EN-US style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> kepler-users-bounces@kepler-project.org [mailto:kepler-users-bounces@kepler-project.org] <b>On Behalf Of </b>Matt Jones<br><b>Sent:</b> quinta-feira, 27 de Janeiro de 2011 16:51<br><b>To:</b> JOHNER Jean 066030<br><b>Cc:</b> kepler-users@kepler-project.org<br><b>Subject:</b> Re: [kepler-users] R installation for Kepler 1.0.0 on Windows (bis)<o:p></o:p></span></p></div><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Hi John,<o:p></o:p></p><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>I think you missed option 4:<o:p></o:p></p></div><div><p class=MsoNormal> - The list is filled with busy people and it slipped through the cracks. Sorry.<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>But, to the point of your questions:<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>1) When we first shipped Kepler 1.0.0, there were two windows installers: one with R included, and one without to keep the download sizes lower. You have the one without. We don't ship the one with R because of the licensing implications of mixing GPL code with our BSD licensed software. You can of course install it separately as you have done.<o:p></o:p></p></div><div><p class=MsoNormal>2) For R to work in Kepler, Kepler must be able to find it on the path. Your approach should work, but the Windows path is a tricky thing. Have you verified that you can run R from the command line and its found on the path? I suspect you have a problem with the space in the path to R -- maybe try quoting it, or try it with the 'Program Files' path component replaced with 'Progra~1'. In any case, if Kepler can find R 2.6.2 on the path, it should work.<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>On a side note, why are you using Kepler 1.0.0? Kepler 2 has been out for a while, has a lot of improvements and bug fixes over Kepler 1.0.0, and is supported. There are known problems with the R support in Kepler 1.0.0 that were fixed in Kepler 2. Can you upgrade?<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal style='margin-bottom:12.0pt'>Matt<o:p></o:p></p><div><p class=MsoNormal>On Thu, Jan 27, 2011 at 1:02 AM, JOHNER Jean 066030 <<a href="mailto:Jean.JOHNER@cea.fr">Jean.JOHNER@cea.fr</a>> wrote:<o:p></o:p></p><div><div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'>Hello dear Kepler users,</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'>I got no answer to the 2011-01-11 mail below.</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'>Several possible explanations:</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'>- I am the only Windows Kepler user !</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'>- I am the only Windows Kepler user trying to install R</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'>- This mailing list is not adequate for such a question</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'>Could somebody give me a hint ?</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'>Yours sincerely,</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=FR style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'> </span><span lang=FR><o:p></o:p></span></p><div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=FR style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy'>Jean Johner</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=FR style='color:navy'> </span><span lang=FR><o:p></o:p></span></p></div><div><div class=MsoNormal align=center style='text-align:center'><span lang=FR><hr size=2 width="100%" align=center></span></div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><b><span lang=FR style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>De :</span></b><span lang=FR style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> JOHNER Jean 066030 <br><b>Envoyé :</b> mardi 11 janvier 2011 20:08<br><b>À :</b> '<a href="mailto:kepler-users@kepler-project.org" target="_blank">kepler-users@kepler-project.org</a>'<br><b>Objet :</b> R installation for Kepler 1.0.0 on Windows</span><span lang=FR><o:p></o:p></span></p></div><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=FR> <o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>Hello,</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>I am new to Kepler. Sorry if my problem has been overposted.</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>I first installed Kepler 1.0.0 on Windows XP from <a href="https://kepler-project.org/users/downloads" target="_blank">https://kepler-project.org/users/downloads</a>.</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>After opening the 00-StatisticalSummary.xml workflow in C:\Program Files\Kepler-1.0.0\demos\getting-started and pressing the Run button, I get the following message : </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>« There has been a problem launching the R application !</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>It may be that R is not installed on your system, or it</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>may not be on your path and cannot be located by Kepler.</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>Please make sure R is installed and the R command line</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>executable is in the path. For more information, see </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>section 8.2.2 of the KeplerUser Manual .»</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>Reading section 2.2.2 of the UserManual, we see :</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>5. Choose the packs to install: Base, R (2.6.2), Sources. The Base pack is required.</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>The Sources pack contains the application source code which, if installed, allows</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>you to build Kepler yourself. We recommend that you select all three (the</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>default), which installs the Kepler software and source and R on your system.</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>Unfortunately, <b>only the Base and Sources</b> packages are proposed in kepler-win-1.0.0.exe.</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>So, I installed R-2.6.2 independently, added “C:\Program Files\R\R-2.6.2\bin” to the Windows path and reinstalled Kepler.</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>But the above message is still there in the same conditions.</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>Questions :</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>1/ why is the R (2.6.2) package absent from the installation exe</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>2/ what is wrong in the above explained work-around.</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'>Best regards.</span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif"'> </span><span lang=FR><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span lang=EN-US style='font-size:10.0pt;font-family:"Arial","sans-serif";color:#888888'>Jean Johner </span><span lang=FR style='color:#888888'><o:p></o:p></span></p></div></div><p class=MsoNormal style='margin-bottom:12.0pt'><br>_______________________________________________<br>Kepler-users mailing list<br><a href="mailto:Kepler-users@kepler-project.org">Kepler-users@kepler-project.org</a><br><a href="http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users" target="_blank">http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users</a><o:p></o:p></p></div><p class=MsoNormal><o:p> </o:p></p></div></div></body></html>