I think the problem I am having is that it is trying to validate the XML against<br />http://ptolemy.eecs.berkeley.edu/xml/dtd/MoML_1.dtd, and my proxy<br />is probably in the way. Although I set the proxy in the kepler.bat file on the<br />command-line. I am not sure why it isn't going through.<br />Chris<br /><br />     [null] java.net.ConnectException: Connection timed out: connect<br />     [null]     at java.net.PlainSocketImpl.socketConnect(Native Method)<br />     [null]     at java.net.PlainSocketImpl.doConnect(Unknown Source)<br />     [null]     at java.net.PlainSocketImpl.connectToAddress(Unknown Source)<br />     [null]     at java.net.PlainSocketImpl.connect(Unknown Source)<br />     [null]     at java.net.SocksSocketImpl.connect(Unknown Source)<br />     [null]     at java.net.Socket.connect(Unknown Source)<br />     [null]     at java.net.Socket.connect(Unknown Source)<br />     [null]     at sun.net.NetworkClient.doConnect(Unknown Source)<br />     [null]     at sun.net.www.http.HttpClient.openServer(Unknown Source)<br />     [null]     at sun.net.www.http.HttpClient.openServer(Unknown Source)<br />     [null]     at sun.net.www.http.HttpClient.<init>(Unknown Source)<br />     [null]     at sun.net.www.http.HttpClient.New(Unknown Source)<br />     [null]     at sun.net.www.http.HttpClient.New(Unknown Source)<br />     [null]     at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(<br />Unknown Source)<br />     [null]     at sun.net.www.protocol.http.HttpURLConnection.plainConnect(Unkn<br />own Source)<br />     [null]     at sun.net.www.protocol.http.HttpURLConnection.connect(Unknown S<br />ource)<br />     [null]     at sun.net.www.protocol.http.HttpURLConnection.getInputStream(Un<br />known Source)<br />     [null]     at org.apache.xerces.impl.XMLEntityManager.setupCurrentEntity(Un<br />known Source)<br />     [null]     at org.apache.xerces.impl.XMLEntityManager.startEntity(Unknown S<br />ource)<br />     [null]     at org.apache.xerces.impl.XMLEntityManager.startDTDEntity(Unknow<br />n Source)<br />     [null]     at org.apache.xerces.impl.XMLDTDScannerImpl.setInputSource(Unkno<br />wn Source)<br />     [null]     at org.apache.xerces.impl.XMLDocumentScannerImpl$DTDDispatcher.d<br />ispatch(Unknown Source)<br />     [null]     at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDoc<br />ument(Unknown Source)<br />     [null]     at org.apache.xerces.parsers.XML11Configuration.parse(Unknown So<br />urce)<br />     [null]     at org.apache.xerces.parsers.XML11Configuration.parse(Unknown So<br />urce)<br />     [null]     at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)<br />     [null]     at org.apache.xerces.parsers.DOMParser.parse(Unknown Source)<br />     [null]     at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Sour<br />ce)<br />     [null]     at org.kepler.moml.KeplerMetadataExtractor.extractActorMetadata(<br />KeplerMetadataExtractor.java:101)<br />     [null]     at org.kepler.objectmanager.cache.ActorCacheObject.<init>(ActorC<br />acheObject.java:141)<br />     [null]     at org.kepler.kar.handlers.ActorMetadataKAREntryHandler.cache(Ac<br />torMetadataKAREntryHandler.java:169)<br />     [null]     at org.kepler.kar.KARFile.cache(KARFile.java:876)<br />     [null]     at org.kepler.kar.KARFile.cacheKARContents(KARFile.java:591)<br />     [null]     at org.kepler.kar.SaveKAR.saveToCache(SaveKAR.java:184)<br />     [null]     at org.kepler.gui.kar.ExportArchiveAction.actionPerformed(Export<br />ArchiveAction.java:344)<br />     [null]     at javax.swing.AbstractButton.fireActionPerformed(Unknown Source<br />)<br />     [null]     at javax.swing.AbstractButton$Handler.actionPerformed(Unknown So<br />urce)<br />     [null]     at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown So<br />urce)<br />     [null]     at javax.swing.DefaultButtonModel.setPressed(Unknown Source)<br />     [null]     at javax.swing.AbstractButton.doClick(Unknown Source)<br />     [null]     at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source<br />)<br />     [null]     at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(<br />Unknown Source)<br />     [null]     at java.awt.Component.processMouseEvent(Unknown Source)<br />     [null]     at javax.swing.JComponent.processMouseEvent(Unknown Source)<br />     [null]     at java.awt.Component.processEvent(Unknown Source)<br />     [null]     at java.awt.Container.processEvent(Unknown Source)<br />     [null]     at java.awt.Component.dispatchEventImpl(Unknown Source)<br />     [null]     at java.awt.Container.dispatchEventImpl(Unknown Source)<br />     [null]     at java.awt.Component.dispatchEvent(Unknown Source)<br />     [null]     at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Sou<br />rce)<br />     [null]     at java.awt.LightweightDispatcher.processMouseEvent(Unknown Sour<br />ce)<br />     [null]     at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)<br />     [null]     at java.awt.Container.dispatchEventImpl(Unknown Source)<br />     [null]     at java.awt.Window.dispatchEventImpl(Unknown Source)<br />     [null]     at java.awt.Component.dispatchEvent(Unknown Source)<br />     [null]     at java.awt.EventQueue.dispatchEvent(Unknown Source)<br />     [null]     at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown S<br />ource)<br />     [null]     at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Sour<br />ce)<br />     [null]     at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown S<br />ource)<br />     [null]     at java.awt.EventDispatchThread.pumpEvents(Unknown Source)<br />     [null]     at java.awt.EventDispatchThread.pumpEvents(Unknown Source)<br />     [null]     at java.awt.EventDispatchThread.run(Unknown Source)<br />     [null] Error parsing Actor KAR DOM "<?xml version="1.0"?><br />     [null] <!DOCTYPE entity PUBLIC "-//UC Berkeley//DTD MoML 1//EN"<br />     [null]     "http://ptolemy.e...": Connection timed out: connect<br />     [null] WARN  (org.kepler.objectmanager.cache.CacheManager:insertObject:237)<br /> KAREntry has no lsid: null<br /><br />On Jul 19, 2010 5:50pm, chrisweed@gmail.com wrote:<br />> Thanks, I'll try that.<br />> Chris<br />> <br />> On Jul 19, 2010 5:49pm, Jianwu Wang jianwu@sdsc.edu> wrote:<br />> > <br />> > <br />> > <br />> >   <br />> > <br />> > <br />> > Hi Chris,<br />> > <br />> > <br />> > <br />> >     If you right-click the actor and choose 'Save Archive (KAR)...', a<br />> > dialog called 'Add Semantic Types?' will show up. If you click 'yes',<br />> > you can choose corresponding semantic type for this actor. Then another<br />> > dialog will show up to save the kar file of this actor. The default<br />> > location is at $KeplerData/workflows/MyWorkflows. If you save the kar<br />> > file in $KeplerData/workflows/MyWorkflows directory, you can search and<br />> > find the actor in the ontology-tree window. It will show up under both<br />> > its ontology annotations and MyWorkflows icon.<br />> > <br />> > Best wishes<br />> > <br />> > Sincerely yours<br />> > <br />> > Jianwu Wang<br />> > jianwu@sdsc.edu<br />> > http://users.sdsc.edu/~jianwu/<br />> > <br />> > Assistant Project Scientist<br />> > Scientific Workflow Automation Technologies (SWAT) Laboratory<br />> > San Diego Supercomputer Center <br />> > University of California, San Diego<br />> > San Diego, CA, U.S.A. <br />> > <br />> > <br />> > On 7/19/2010 2:34 PM, chrisweed@gmail.com wrote:<br />> > What is the correct method for adding an actor to the<br />> > local repository, so it shows up in the ontology-tree window?<br />> > <br />> > I didn't see how to do this in the user guide. I tried the old "upload<br />> > to repository" method, but that didn't seem to do anything.<br />> > <br />> > Chris<br />> >   <br />> > <br />> > _______________________________________________<br />> > Kepler-users mailing list<br />> > Kepler-users@kepler-project.org<br />> > http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users<br />> >   <br />> > <br />> > <br />> >