Great! It works. Moreover, I clearly indetify the run KAR because it contains the database ID of the execution.<br><br>Many thanks<br><br><div class="gmail_quote">2010/3/16 Josep Morer Muñoz <span dir="ltr"><<a href="mailto:josep.morer@gmail.com">josep.morer@gmail.com</a>></span><br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Thanks Derik! I will test your modification and let you the results.<br><br><div class="gmail_quote">
2010/3/15 Derik Barseghian <span dir="ltr"><<a href="mailto:barseghian@nceas.ucsb.edu" target="_blank">barseghian@nceas.ucsb.edu</a>></span><div><div></div><div class="h5"><br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi Josep,<br>
<br>
I've done this in r23358, the resultant kars are now written into KeplerData/workflow-runs/. Hope this helps.<br><font color="#888888">
<br>
Derik</font><div><div></div><div><br>
<br>
<br>
On Mar 15, 2010, at 2:25 PM, Derik Barseghian wrote:<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi Josep,<br>
<br>
As a stopgap I'll implement the automatic writing of these run KARs to disk in KeplerData/ for you in trunk (not 2.0), it shouldn't be too hard.<br>
<br>
Derik<br>
<br>
On Mar 15, 2010, at 2:00 PM, Derik Barseghian wrote:<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
I believe how it works right now is that if you're not uploading to the repository, no KAR is generated. Reporting artifacts are serialized to disk, but as temporary files that get deleted on exit (this is easily changed by removing deleteOnExit calls in ReportingListener writeFiles()).<br>
<br>
If you are uploading to a repository, in addition to the temporary reporting artifacts, a temporary KAR is generated that is uploaded, and then also deleted on exit.<br>
<br>
I agree with Chad's email in the other thread that we should expand command line control capabilities, and that it should be up to the user if and where they want to serialize their results. And we should definitely allow the generation of resultant KARs to disk without upload. Chad's entered an enhancement request that we can work on:<br>
<a href="http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4883" target="_blank">http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4883</a><br>
<br>
Derik<br>
<br>
<br>
On Mar 15, 2010, at 11:52 AM, Josep Morer Muñoz wrote:<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
I agree with you Matt. In my case, it will be enough if I can get the run KAR and store it in the filesystem.<br>
<br>
Is there any way to get the run KAR without the GUI? As I understand it is not implemented yet.<br>
<br>
Thanks<br>
<br>
On 15 March 2010 19:28, Matt Jones <<a href="mailto:jones@nceas.ucsb.edu" target="_blank">jones@nceas.ucsb.edu</a>> wrote:<br>
Seems to me that it should go in KeplerData, under whichever local file system repository has been configured for KAR outputs. I had been under the impression that this was already the case, but maybe I'm mistaken. Aaron or Derik can probably clarify.<br>
<br>
Matt<br>
<br>
<br>
2010/3/15 ben leinfelder <<a href="mailto:leinfelder@nceas.ucsb.edu" target="_blank">leinfelder@nceas.ucsb.edu</a>><br>
Josep,<br>
You raise a good point - when running from the command line script, the "products" of the KAR execution are not made available - at least not in a direct way. We've been building the command line feature so that the results of the KAR/workflow run (i.e. the report) would be packaged in a "run KAR" along with the workflow and report layout and that KAR would be uploaded to a remote repository along with some metadata that described the content of the run KAR.<br>
In your case, you just want the run KAR to be available on your local filesystem.<br>
Do you have suggestions as to where the run KAR should be placed once execution has wrapped up and the KAR is built?<br>
-ben<br>
<br>
<br>
On Mar 15, 2010, at 10:58 AM, Josep Morer Muñoz wrote:<br>
<br>
Thanks Ben.<br>
<br>
I have been switched to wrp suite and it seems it works. Now, using the workflow run manager, I can save the KAR which contains a PDF that is generated using the run selected.<br>
<br>
However, I would like to generate this PDF for every run that is executed using "kepler.sh workflow.kar -runwf -nogui". When I save a KAR, it only contains the workflow and the report layout. If I execute it, neither the workflow run XML nor the PDF file, appeared in the KAR. When are they generated? I am trying to automatize all the process using the command line execution and extract the PDF from the KAR (or whatever place is generated).<br>
<br>
Thanks for your help<br>
<br>
<br>
<br>
2010/3/15 ben leinfelder <<a href="mailto:leinfelder@nceas.ucsb.edu" target="_blank">leinfelder@nceas.ucsb.edu</a>><br>
Josep -<br>
Please use the 'wrp' suite instead of the 'reporting' module.<br>
Thanks,<br>
-ben<br>
<br>
<br>
On Mar 13, 2010, at 3:53 AM, Josep Morer Muñoz wrote:<br>
<br>
I have updated kepler using "ant update" and I have noticed that reporting designer view has disappeared. It has been moved into another module or something similar?<br>
<br>
I have downloaded all project another time using this following commads:<br>
<br>
mkdir KeplerLast<br>
cd KeplerLast<br>
svn co <a href="https://code.kepler-project.org/code/kepler/trunk/modules/build-area" target="_blank">https://code.kepler-project.org/code/kepler/trunk/modules/build-area</a><br>
cd build-area<br>
<br>
ant change-to -Dsuite=reporting<br>
<br>
Now, it seems that when I execute kepler.sh, the reporting module is initialized but no reporting designer view appears in the GUI.<br>
<br>
urops@urops-laptop:~/KeplerLast$ ./kepler.sh<br>
[null] /home/urops/KeplerLast<br>
[null] Found OS Extension file: /home/urops/KeplerLast/apple-extensions/module-info/osextension.txt<br>
[null] Building Kars...<br>
[null] Ran additional initialization for module gui from class org.kepler.module.gui.Initialize<br>
[null] Ran additional initialization for module tagging from class org.kepler.module.tagging.Initialize<br>
[null] Ran additional initialization for module provenance from class org.kepler.module.provenance.Initialize<br>
[null] common tabpane configuration overridden by reporting<br>
[null] Ran additional initialization for module reporting from class org.kepler.module.reporting.Initialize<br>
[null] /usr/share/themes/Human/gtk-2.0/gtkrc:51: error: lexical error or unexpected token, expected valid token<br>
[null] Kepler Initializing...<br>
[null] *** Attempting to get ResourceBundle for SVG defaults ***<br>
[null] *** svgRenderingMethod = SVG_BATIK_RENDERING ***<br>
<br>
<br>
I am probably missing something... Could you help me?<br>
<br>
-- <br>
Josep<br>
_______________________________________________<br>
Kepler-users mailing list<br>
<a href="mailto:Kepler-users@kepler-project.org" target="_blank">Kepler-users@kepler-project.org</a><br>
<a href="http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users" target="_blank">http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users</a><br>
<br>
<br>
<br>
<br>
-- <br>
Josep<br>
<br>
_______________________________________________<br>
Kepler-users mailing list<br>
<a href="mailto:Kepler-users@kepler-project.org" target="_blank">Kepler-users@kepler-project.org</a><br>
<a href="http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users" target="_blank">http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users</a><br>
<br>
<br>
<br>
<br>
-- <br>
Josep<br>
_______________________________________________<br>
Kepler-users mailing list<br>
<a href="mailto:Kepler-users@kepler-project.org" target="_blank">Kepler-users@kepler-project.org</a><br>
<a href="http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users" target="_blank">http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users</a><br>
</blockquote>
<br>
----------<br>
Derik Barseghian<br>
<a href="http://nceas.ucsb.edu/ecoinfo" target="_blank">http://nceas.ucsb.edu/ecoinfo</a> | office: 805-893-5127<br>
Rm 3411, Marine Science Research Building, UCSB<br>
Santa Barbara, CA, 93106-6150<br>
<br>
_______________________________________________<br>
Kepler-users mailing list<br>
<a href="mailto:Kepler-users@kepler-project.org" target="_blank">Kepler-users@kepler-project.org</a><br>
<a href="http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users" target="_blank">http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users</a><br>
</blockquote>
<br>
</blockquote>
<br>
</div></div></blockquote></div></div></div><br><br clear="all"><br>-- <br><font color="#888888">Josep<br>
</font></blockquote></div><br><br clear="all"><br>-- <br>Josep<br>