[kepler-users] Can save workflow as xml, but not as kar.

Tue Feb 12 11:07:00 PST 2013

FWIW ...

I've now done an "ant clean-all" and deleted .ptolemyII from my
user/home directory.  Unfortunately, I still get the same error.  I've
also tried moving the xml file to another directory.  I get the same
error.

-- Tom

On Tue, Feb 12, 2013 at 1:52 PM, Tom Parris <parris at isciences.com> wrote:
> Dan,
>
> Thanks for your prompt response.  I did an ant update this morning.
> See the svn URL and revision numbers for each directory in the Kepler
> root directory at end of message.  It looks to me like I'm up to date.
>
> Strangely, after showing this error to a colleague (which inspired me
> to submit the message), he was not able to reproduce it on his Kepler
> installation (which is the same build).
>
> I had done an "ant clean-cache" and that did not fix the problem.
>
> I also tried moving the xml file to another location, but that did not
> help either.
>
> My colleague suggested I try an "ant clean" to force a recompile.
> That did not fix the issue.
>
> So, I'm still rather perplexed.  The problem seems to be localized to
> my machine, but why?
>
> -- Tom
>
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/actors
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/authentication
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/authentication-gui
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/build-area
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/common
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/component-library
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/configuration-manager
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/core
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/data-handling
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/dataone
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/dataturbine
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/directors
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/display-redirect
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/ecogrid
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/event-state
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/gui
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/io
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/job
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/kepler
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/kepler-tasks
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/loader
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/module-manager
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/module-manager-gui
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/opendap
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/outreach
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/ptolemy
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/r
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/repository
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/sms
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/ssh
> Revision: 31428
> URL: https://code.kepler-project.org/code/kepler/trunk/modules/util
> Revision: 31428
>
>
>
> On Tue, Feb 12, 2013 at 1:28 PM, Daniel Crawl <danielcrawl at gmail.com> wrote:
>>
>> Hi Tom,
>>
>> I can't reproduce this with the trunk, but can with Kepler 2.3.
>> Are all of your sources at r31428?
>>
>>   --dan
>>
>>
>>
>> On 2/12/13 7:19 AM, Tom Parris wrote:
>>>
>>> Dear Kepler-Users:
>>>
>>> I can save the attached workflow as an xml document.  But when I try
>>> to save as a kar, I get an error (see full stack trace below).
>>>
>>> Kepler Version: Trunk (rev 31428)
>>> OS: Windows 7 Pro (x64)
>>> Java: 1.7.0_11
>>>
>>> The problem appears to be with the class.  I can save a simpler
>>> workflow that is identical, but does not use a class.  Note that
>>> C:\Kepler\svn\ is my Kepler root directory.
>>>
>>> Any help would be much appreciated.
>>>
>>> -- Tom
>>>
>>>
>>> ptolemy.kernel.util.IllegalActionException: Cannot find class: TestClass
>>> Because:
>>> -- C:\Kepler\svn\TestClass.xml (The system cannot find the file specified)
>>> -- XML file not found relative to classpath.
>>> -- C:\Kepler\svn\TestClass.xml
>>> C:\Kepler\svn\TestClass.xml (The system cannot find the file specified)
>>>   in file:/C:/Kepler/svn/ at line 176 and column 43
>>>         at ptolemy.moml.MoMLParser._createEntity(MoMLParser.java:4098)
>>>         at ptolemy.moml.MoMLParser.startElement(MoMLParser.java:2697)
>>>         at com.microstar.xml.XmlParser.parseElement(XmlParser.java:921)
>>>         at com.microstar.xml.XmlParser.parseContent(XmlParser.java:1104)
>>>         at com.microstar.xml.XmlParser.parseElement(XmlParser.java:924)
>>>         at com.microstar.xml.XmlParser.parseDocument(XmlParser.java:481)
>>>         at com.microstar.xml.XmlParser.doParse(XmlParser.java:159)
>>>         at com.microstar.xml.XmlParser.parse(XmlParser.java:132)
>>>         at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1556)
>>>         at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1512)
>>>         at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1655)
>>>         at
>>> org.kepler.objectmanager.ActorMetadata.lookForMoml(ActorMetadata.java:1596)
>>>         at
>>> org.kepler.objectmanager.ActorMetadata.getActorClass(ActorMetadata.java:1668)
>>>         at
>>> org.kepler.objectmanager.ActorMetadata.<init>(ActorMetadata.java:296)
>>>         at
>>> org.kepler.objectmanager.cache.ActorCacheObject.getMetadata(ActorCacheObject.java:292)
>>>         at
>>> org.kepler.objectmanager.cache.ActorCacheObject.getObject(ActorCacheObject.java:180)
>>>         at
>>> org.kepler.kar.handlers.ActorMetadataKAREntryHandler.open(ActorMetadataKAREntryHandler.java:273)
>>>         at org.kepler.kar.KARFile.open(KARFile.java:972)
>>>         at org.kepler.kar.KARFile.openKARContents(KARFile.java:740)
>>>         at
>>> org.kepler.gui.kar.ExportArchiveAction.actionPerformed(ExportArchiveAction.java:503)
>>>         at
>>> javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
>>>         at
>>> javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
>>>         at
>>> javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
>>>         at
>>> javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
>>>         at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
>>>         at
>>> javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
>>>         at
>>> javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877)
>>>         at java.awt.Component.processMouseEvent(Component.java:6505)
>>>         at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
>>>         at java.awt.Component.processEvent(Component.java:6270)
>>>         at java.awt.Container.processEvent(Container.java:2229)
>>>         at java.awt.Component.dispatchEventImpl(Component.java:4861)
>>>         at java.awt.Container.dispatchEventImpl(Container.java:2287)
>>>         at java.awt.Component.dispatchEvent(Component.java:4687)
>>>         at
>>> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)
>>>         at
>>> java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492)
>>>         at
>>> java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)
>>>         at java.awt.Container.dispatchEventImpl(Container.java:2273)
>>>         at java.awt.Window.dispatchEventImpl(Window.java:2719)
>>>         at java.awt.Component.dispatchEvent(Component.java:4687)
>>>         at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:723)
>>>         at java.awt.EventQueue.access$200(EventQueue.java:103)
>>>         at java.awt.EventQueue$3.run(EventQueue.java:682)
>>>         at java.awt.EventQueue$3.run(EventQueue.java:680)
>>>         at java.security.AccessController.doPrivileged(Native Method)
>>>         at
>>> java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
>>>         at
>>> java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
>>>         at java.awt.EventQueue$4.run(EventQueue.java:696)
>>>         at java.awt.EventQueue$4.run(EventQueue.java:694)
>>>         at java.security.AccessController.doPrivileged(Native Method)
>>>         at
>>> java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
>>>         at java.awt.EventQueue.dispatchEvent(EventQueue.java:693)
>>>         at
>>> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
>>>         at
>>> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
>>>         at
>>> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
>>>         at
>>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
>>>         at
>>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
>>>         at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)
>>> Caused by: com.microstar.xml.XmlException: --
>>> C:\Kepler\svn\TestClass.xml (The system cannot find the file
>>> specified)
>>> -- XML file not found relative to classpath.
>>> -- C:\Kepler\svn\TestClass.xml
>>> C:\Kepler\svn\TestClass.xml (The system cannot find the file specified)
>>>   in file:/C:/Kepler/svn/ at line 176 and column 43
>>>         at ptolemy.moml.MoMLParser.fileNameToURL(MoMLParser.java:1312)
>>>         at ptolemy.moml.MoMLParser._findOrParse(MoMLParser.java:5012)
>>>         at
>>> ptolemy.moml.MoMLParser._attemptToFindMoMLClass(MoMLParser.java:3870)
>>>         at ptolemy.moml.MoMLParser._createEntity(MoMLParser.java:4093)
>>>         ... 57 more
>>> Caused by: com.microstar.xml.XmlException: --
>>> C:\Kepler\svn\TestClass.xml (The system cannot find the file
>>> specified)
>>> -- XML file not found relative to classpath.
>>> -- C:\Kepler\svn\TestClass.xml
>>> C:\Kepler\svn\TestClass.xml (The system cannot find the file specified)
>>>   in file:/C:/Kepler/svn/ at line 176 and column 43
>>>         at ptolemy.moml.MoMLParser.fileNameToURL(MoMLParser.java:1312)
>>>         at ptolemy.moml.MoMLParser._findOrParse(MoMLParser.java:5012)
>>>         at
>>> ptolemy.moml.MoMLParser._attemptToFindMoMLClass(MoMLParser.java:3870)
>>>         at ptolemy.moml.MoMLParser._createEntity(MoMLParser.java:4093)
>>>         at ptolemy.moml.MoMLParser.startElement(MoMLParser.java:2697)
>>>         at com.microstar.xml.XmlParser.parseElement(XmlParser.java:921)
>>>         at com.microstar.xml.XmlParser.parseContent(XmlParser.java:1104)
>>>         at com.microstar.xml.XmlParser.parseElement(XmlParser.java:924)
>>>         at com.microstar.xml.XmlParser.parseDocument(XmlParser.java:481)
>>>         at com.microstar.xml.XmlParser.doParse(XmlParser.java:159)
>>>         at com.microstar.xml.XmlParser.parse(XmlParser.java:132)
>>>         at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1556)
>>>         at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1512)
>>>         at ptolemy.moml.MoMLParser.parse(MoMLParser.java:1655)
>>>         at
>>> org.kepler.objectmanager.ActorMetadata.lookForMoml(ActorMetadata.java:1596)
>>>         at
>>> org.kepler.objectmanager.ActorMetadata.getActorClass(ActorMetadata.java:1668)
>>>         at
>>> org.kepler.objectmanager.ActorMetadata.<init>(ActorMetadata.java:296)
>>>         at
>>> org.kepler.objectmanager.cache.ActorCacheObject.getMetadata(ActorCacheObject.java:292)
>>>         at
>>> org.kepler.objectmanager.cache.ActorCacheObject.getObject(ActorCacheObject.java:180)
>>>         at
>>> org.kepler.kar.handlers.ActorMetadataKAREntryHandler.open(ActorMetadataKAREntryHandler.java:273)
>>>         at org.kepler.kar.KARFile.open(KARFile.java:972)
>>>         at org.kepler.kar.KARFile.openKARContents(KARFile.java:740)
>>>         at
>>> org.kepler.gui.kar.ExportArchiveAction.actionPerformed(ExportArchiveAction.java:503)
>>>         at
>>> javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
>>>         at
>>> javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
>>>         at
>>> javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
>>>         at
>>> javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
>>>         at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
>>>         at
>>> javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
>>>         at
>>> javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877)
>>>         at java.awt.Component.processMouseEvent(Component.java:6505)
>>>         at javax.swing.JComponent.processMouseEvent(JComponent.java:3321)
>>>         at java.awt.Component.processEvent(Component.java:6270)
>>>         at java.awt.Container.processEvent(Container.java:2229)
>>>         at java.awt.Component.dispatchEventImpl(Component.java:4861)
>>>         at java.awt.Container.dispatchEventImpl(Container.java:2287)
>>>         at java.awt.Component.dispatchEvent(Component.java:4687)
>>>         at
>>> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4832)
>>>         at
>>> java.awt.LightweightDispatcher.processMouseEvent(Container.java:4492)
>>>         at
>>> java.awt.LightweightDispatcher.dispatchEvent(Container.java:4422)
>>>         at java.awt.Container.dispatchEventImpl(Container.java:2273)
>>>         at java.awt.Window.dispatchEventImpl(Window.java:2719)
>>>         at java.awt.Component.dispatchEvent(Component.java:4687)
>>>         at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:723)
>>>         at java.awt.EventQueue.access$200(EventQueue.java:103)
>>>         at java.awt.EventQueue$3.run(EventQueue.java:682)
>>>         at java.awt.EventQueue$3.run(EventQueue.java:680)
>>>         at java.security.AccessController.doPrivileged(Native Method)
>>>         at
>>> java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
>>>         at
>>> java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
>>>         at java.awt.EventQueue$4.run(EventQueue.java:696)
>>>         at java.awt.EventQueue$4.run(EventQueue.java:694)
>>>         at java.security.AccessController.doPrivileged(Native Method)
>>>         at
>>> java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
>>>         at java.awt.EventQueue.dispatchEvent(EventQueue.java:693)
>>>         at
>>> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
>>>         at
>>> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
>>>         at
>>> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
>>>         at
>>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
>>>         at
>>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
>>>         at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)
>>>
>>>
>>>
>>> _______________________________________________
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>>> Kepler-users at kepler-project.org
>>> http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users
>>>
>>