[kepler-users] Not able to compile Trunk or Kepler-2.0
Jim Amrhein
James.S.Amrhein at nasa.gov
Thu Sep 2 07:25:29 PDT 2010
David,
You're right. Starting with a new KeplerData solved the problem.
Thanks for the help.
Jim
On 09/01/2010 07:51 PM, David Welker wrote:
> I think I might know the cause of Jim's problem. We have changed where
> some of the configuration stuff is located. It could be that Jim's
> configuration in his local KeplerData is interfering with this.
>
> This bring up an issue. We might want to have a third area besides
> KeplerData and .kepler (the cache) for configuration. Configuration is
> not like cache (it shouldn't be deleted casually) but it might
> sometimes cause problems, at least considering how the current
> configuration system is designed. The issue is that when there are
> local changes to configuration in the modules, Kepler prefers whatever
> configuration has been copied over to KeplerData over it, so those
> changes do not get through. This might be redesigned in a more clever
> way to avoid this problem, but right now this is how the configuration
> system works.
>
> Anyway, the solution I would suggest to Jim, assuming that there is no
> important data in there, would be to delete<user.home>/KeplerData/
> modules. I know that this is not an optimal solution, in that the
> whole point of separating KeplerData from the cache was to create an
> area that does not have to be deleted. But, I think we may need to
> make a further distinction. Configuration and other programatically
> created "stuff" sometimes does not belong in the cache. It is not
> something that should normally be casually deleted. However, as
> development proceeds, incompatibilities between the configuration from
> different versions seems inevitable. For this reason, we might want to
> create a different location from where the users work is stored, so
> that configuration can be deleted when necessary.
>
> Jim, can you please delete<user.home>/KeplerData/modules (assuming
> you don't have any important data stored there -- better look to make
> sure if you aren't sure) and let me know if this solves your issue?
>
> Thanks!
>
> -David
>
>
> On Sep 1, 2010, at 5:33 PM, Jianwu Wang wrote:
>
>
>> Hi Jim,
>>
>> What's your current-suite.txt looks like? Did you redo 'ant
>> change-to -Dsuite=kepler' before run Kepler to make sure the current-
>> suite.txt is generated correctly? Please provide the full error
>> context so that we can help you more quickly.
>>
>> I can start Kepler correctly.
>>
>> Best wishes
>>
>> Sincerely yours
>>
>> Jianwu Wang
>> jianwu at sdsc.edu
>> http://users.sdsc.edu/~jianwu/
>>
>> Assistant Project Scientist
>> Scientific Workflow Automation Technologies (SWAT) Laboratory
>> San Diego Supercomputer Center
>> University of California, San Diego
>> San Diego, CA, U.S.A.
>>
>>
>> On 9/1/2010 3:33 PM, Jim Amrhein wrote:
>>
>>> David,
>>> Updated build-area. I can compile kepler, but when I run it , I'm
>>> still getting the error:
>>>
>>> [run] [Fatal Error] :-1:-1: Premature end of file.
>>> [run] org.apache.commons.configuration.ConfigurationException:
>>> Unable to load the configuration
>>> [run] at
>>> org
>>> .apache
>>> .commons.configuration.XMLConfiguration.load(XMLConfiguration.java:
>>> 863)
>>> [run] at
>>> org
>>> .apache
>>> .commons.configuration.XMLConfiguration.load(XMLConfiguration.java:
>>> 821)
>>> [run] at
>>> org
>>> .kepler
>>> .configuration
>>> .CommonsConfigurationReader
>>> .loadConfiguration(CommonsConfigurationReader.java:144)
>>> [run] at
>>> org
>>> .kepler
>>> .configuration
>>> .CommonsConfigurationReader
>>> .loadConfigurations(CommonsConfigurationReader.java:92)
>>> [run] at
>>> org
>>> .kepler
>>> .configuration
>>> .CommonsConfigurationReader
>>> .loadConfigurations(CommonsConfigurationReader.java:64)
>>> [run] at
>>> org
>>> .kepler
>>> .configuration
>>> .ConfigurationManager.loadConfiguration(ConfigurationManager.java:
>>> 420)
>>>
>>> Thought this was part of Bug 5168, but I guess not.
>>>
>>> Thanks,
>>> JSA
>>>
>>>
>>>
>>>
>>> David Welker wrote:
>>>
>>>> Hi Jim,
>>>>
>>>> This bug is now fixed. Please update your build-area folder and
>>>> try again. Let me know if you have any more problems.
>>>>
>>>> -David
>>>>
>>>> On Sep 1, 2010, at 4:00 PM, Jianwu Wang wrote:
>>>>
>>>>
>>>>> Hi Jim,
>>>>>
>>>>> I'm not sure the reason. But it probably is related to a bug
>>>>> Kepler trunk got today: http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5168
>>>>> . Sorry about it.
>>>>>
>>>>> I hope it can be quickly fixed so that you can try it again.
>>>>>
>>>>> Best wishes
>>>>>
>>>>> Sincerely yours
>>>>>
>>>>> Jianwu Wang
>>>>> jianwu at sdsc.edu
>>>>> http://users.sdsc.edu/~jianwu/
>>>>>
>>>>> Assistant Project Scientist
>>>>> Scientific Workflow Automation Technologies (SWAT) Laboratory
>>>>> San Diego Supercomputer Center
>>>>> University of California, San Diego
>>>>> San Diego, CA, U.S.A.
>>>>>
>>>>>
>>>>> On 9/1/2010 2:45 PM, Jim Amrhein wrote:
>>>>>
>>>>>> Thanks, I ended up copying the ptolemy from a few days ago to
>>>>>> get past that connection error.
>>>>>> Tho the 5 minute cleanup doesn't help...
>>>>>> So onward :
>>>>>> 1. By any chance have you run into this error?
>>>>>>
>>>>>> [run] [Fatal Error] :-1:-1: Premature end of file.
>>>>>> [run]
>>>>>> org.apache.commons.configuration.ConfigurationException: Unable
>>>>>> to load the configuration
>>>>>> [run] at
>>>>>> org
>>>>>> .apache
>>>>>> .commons
>>>>>> .configuration.XMLConfiguration.load(XMLConfiguration.java: 863)
>>>>>>
>>>>>> 2. What should the contents/format of current-suite.txt be?
>>>>>> This might be related to #1.
>>>>>>
>>>>>>
>>>>>> Thanks,
>>>>>> JSA
>>>>>>
>>>>>> Thanks,
>>>>>>
>>>>>> Jianwu Wang wrote:
>>>>>>
>>>>>>> Hi Jim,
>>>>>>>
>>>>>>> I think it is because of the recent fluctuation of ptolemy
>>>>>>> svn server. You can check more info at http://mercury.nceas.ucsb.edu/kepler/pipermail/kepler-dev/2010-August/018832.html
>>>>>>> .
>>>>>>>
>>>>>>> Please try those commands for a few more times to get
>>>>>>> better chance to connect source.eecs.berkeley.edu.
>>>>>>>
>>>>>>> Best wishes
>>>>>>>
>>>>>>> Sincerely yours
>>>>>>>
>>>>>>> Jianwu Wang
>>>>>>> jianwu at sdsc.edu
>>>>>>> http://users.sdsc.edu/~jianwu/
>>>>>>>
>>>>>>> Assistant Project Scientist
>>>>>>> Scientific Workflow Automation Technologies (SWAT) Laboratory
>>>>>>> San Diego Supercomputer Center
>>>>>>> University of California, San Diego
>>>>>>> San Diego, CA, U.S.A.
>>>>>>>
>>>>>>>
>>>>>>> On 9/1/2010 12:56 PM, Jim Amrhein wrote:
>>>>>>>
>>>>>>>> Gang,
>>>>>>>> Today, I checked out both the kepler-2.0 and trunk version of
>>>>>>>> Kepler, using the instructions from the README.txt. No
>>>>>>>> problems until I ran the following step:
>>>>>>>>
>>>>>>>> ant change-to -Dsuite=kepler (Trunk)
>>>>>>>> or
>>>>>>>> ant change-to -Dsuite=kepler-2.0
>>>>>>>>
>>>>>>>> Both run into the same problem:
>>>>>>>>
>>>>>>>> [change-to] ptolemy revision: 58234
>>>>>>>> [change-to] svn co -r 58234 svn://source.eecs.berkeley.edu/
>>>>>>>> chess/ ptII/branches/rel-8-0-beta-2 /var/localuser/Kepler2.0/
>>>>>>>> modules/ ptolemy-8.0/src
>>>>>>>> [change-to] svn: Can't connect to host
>>>>>>>> 'source.eecs.berkeley.edu': Connection refused
>>>>>>>> [change-to]
>>>>>>>>
>>>>>>>> Which results in the following errors when you try to run
>>>>>>>> "ant compile"
>>>>>>>>
>>>>>>>> [compile] /var/localuser/Kepler-2.0_trunk/modules/module-
>>>>>>>> manager/ src/org/kepler/modulemanager/
>>>>>>>> ModuleDocumentationManagerAction.java:36: package
>>>>>>>> ptolemy.actor.gui does not exist
>>>>>>>> [compile] import ptolemy.actor.gui.TableauFrame;
>>>>>>>> [compile] ^
>>>>>>>> [compile] /var/localuser/Kepler-2.0_trunk/modules/module-
>>>>>>>> manager/ src/org/kepler/modulemanager/
>>>>>>>> ModuleDocumentationManagerAction.java:37: package
>>>>>>>> ptolemy.vergil.toolbox does not exist
>>>>>>>> [compile] import ptolemy.vergil.toolbox.FigureAction;
>>>>>>>>
>>>>>>>> Any suggestions?
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>> Jim
>>>>>>>> _______________________________________________
>>>>>>>> Kepler-users mailing list
>>>>>>>> Kepler-users at kepler-project.org
>>>>>>>> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users
>>>>>>>>
>>>>> _______________________________________________
>>>>> Kepler-users mailing list
>>>>> Kepler-users at kepler-project.org
>>>>> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users
>>>>>
>>>>
>
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