[kepler-users] Fwd: How to pass String and File Parameters using Command Line

[Josep Morer Muñoz]

Hi all,

Can anyone reply to my question?

Thanks

---------- Forwarded message ----------
From: Josep Morer Muñoz <josep.morer at gmail.com>
Date: 2010/6/28
Subject: How to pass String and File Parameters using Command Line
To: Kepler Users <kepler-users at kepler-project.org>


Hi all,

I am having problems when I try to execute a KAR using the command line with
String and File Parameters. As I understand, when a parameter is a number,
you put -parameter 2 f.e  and if it is a string or a file path, you put
-parameter "string". However, for string and file parameters does not work
because I am having errors like this:

urops at ubuntu:~/KeplerLastVersion$ ./kepler.sh -runwf -nogui  -stepsrmsd 42
-ExecutionId 35 -namejob 'SEPT09' -numclustersrmsd 5
/home/urops/CBI/Projectes/2/Execucions/35/KeplerMDAnalyser-Module1-RMSD-CBI[0].kar
     [null] /home/urops/KeplerLastVersion
     [null] Found OS Extension file:
/home/urops/KeplerLastVersion/apple-extensions/module-info/osextension.txt
     [null] Ran additional initialization for module gui from class
org.kepler.module.gui.Initialize
     [null] Ran additional initialization for module tagging from class
org.kepler.module.tagging.Initialize
     [null] Ran additional initialization for module provenance from class
org.kepler.module.provenance.Initialize
     [null] common tabpane configuration overridden by workflow-run-manager
     [null] Ran additional initialization for module workflowrunmanager from
class org.kepler.module.workflowrunmanager.Initialize
     [null] common tabpane configuration overridden by reporting
     [null] Ran additional initialization for module reporting from class
org.kepler.module.reporting.Initialize
     [null] loading: org.kepler.KeplerConfigurationApplication args:
ptolemy/configs/kepler/ConfigNoGUIWithCache.xml -runThenExit -stepsrmsd 42
-ExecutionId 35 -namejob SEPT09 -numclustersrmsd
     [null] invoking: org.kepler.KeplerConfigurationApplication.main
     [null] Kepler Initializing...
     [null] Command failed
     [null] java.lang.Exception: Failed to parse
"ptolemy/configs/kepler/ConfigNoGUIWithCache.xml -runThenExit -stepsrmsd 42
-ExecutionId 35 -namejob SEPT09 -numclustersrmsd"
     [null]     at
ptolemy.actor.gui.ConfigurationApplication.throwArgsException(ConfigurationApplication.java:651)
     [null]     at
org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:288)
     [null]     at
org.kepler.KeplerConfigurationApplication.main(KeplerConfigurationApplication.java:582)
     [null]     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
     [null]     at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
     [null]     at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
     [null]     at java.lang.reflect.Method.invoke(Method.java:616)
     [null]     at org.kepler.Kepler.load(Kepler.java:362)
     [null]     at org.kepler.Kepler.load(Kepler.java:380)
     [null]     at org.kepler.Kepler.parseArgsAndRun(Kepler.java:308)
     [null]     at org.kepler.Kepler.main(Kepler.java:210)
     [null] Caused by: ptolemy.kernel.util.IllegalActionException: Cannot
set parameter -numclustersrmsd when no value is given.
     [null]     at
org.kepler.KeplerConfigurationApplication.parseArgs(KeplerConfigurationApplication.java:308)
     [null]     at
org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:193)
     [null]     ... 9 more
     [null] java.lang.Exception: Failed to parse
"ptolemy/configs/kepler/ConfigNoGUIWithCache.xml -runThenExit -stepsrmsd 42
-ExecutionId 35 -namejob SEPT09 -numclustersrmsd"
     [null]     at
ptolemy.actor.gui.ConfigurationApplication.throwArgsException(ConfigurationApplication.java:651)
     [null]     at
org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:288)
     [null]     at
org.kepler.KeplerConfigurationApplication.main(KeplerConfigurationApplication.java:582)
     [null]     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
     [null]     at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
     [null]     at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
     [null]     at java.lang.reflect.Method.invoke(Method.java:616)
     [null]     at org.kepler.Kepler.load(Kepler.java:362)
     [null]     at org.kepler.Kepler.load(Kepler.java:380)
     [null]     at org.kepler.Kepler.parseArgsAndRun(Kepler.java:308)
     [null]     at org.kepler.Kepler.main(Kepler.java:210)
     [null] Caused by: ptolemy.kernel.util.IllegalActionException: Cannot
set parameter -numclustersrmsd when no value is given.
     [null]     at
org.kepler.KeplerConfigurationApplication.parseArgs(KeplerConfigurationApplication.java:308)
     [null]     at
org.kepler.KeplerConfigurationApplication.<init>(KeplerConfigurationApplication.java:193)
     [null]     ... 9 more
Exception in thread "main" Java returned: 1
    at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:105)
    at org.kepler.build.runner.Kepler.main(Kepler.java:78)
Caused by: Java returned: 1
    at org.apache.tools.ant.taskdefs.Java.execute(Java.java:108)
    at org.kepler.build.Run.runSuite(Run.java:298)
    at org.kepler.build.Run.run(Run.java:202)
    at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:101)
    ... 1 more
--- Nested Exception ---
Java returned: 1
    at org.apache.tools.ant.taskdefs.Java.execute(Java.java:108)
    at org.kepler.build.Run.runSuite(Run.java:298)
    at org.kepler.build.Run.run(Run.java:202)
    at org.kepler.build.modules.ModulesTask.execute(ModulesTask.java:101)
    at org.kepler.build.runner.Kepler.main(Kepler.java:78)

I get this error when I try to pass a String or File parameter with "". Any
idea?

Thanks
-- 
Josep



-- 
Josep
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