[kepler-users] Kepler, Matlab & Mac. How?
Jianwu Wang
jianwu at sdsc.edu
Tue Feb 16 14:56:13 PST 2010
Hi Anil,
If you do not have maci64 directory, usually it is because you
didn't install Matlab 64 bit version. I do not have Mac and Matlab 64
bit on hand. Yet I think you should be able to see '64 bit' signal when
you start Matlab. Or you can check it after you start Matlab.
Another to check I think is your Mac version. You get know your Mac
version by steps at
http://www.apple.com/support/mobileme/en/os_version.html. If your Mac
version is 10.5.x, your Mac is 32 bit. If it is 10.6.x, you Mac should
be 64 bit.
Can you also check your java version by typing 'java -version' at
console? Is it 64 bit or 32 bit?
It is dependent on these information to know which Matlab library
is needed by Kepler to invoke Matlab library. So please let us know your
detailed configuration.
P.S.: We are creating a web page on Kepler-project web site to
explain these stuff. Hopefully, it can be online soon.
Best wishes
Sincerely yours
Jianwu Wang
jianwu at sdsc.edu
http://users.sdsc.edu/~jianwu/
Scientific Workflow Automation Technologies (SWAT) Laboratory
San Diego Supercomputer Center
University of California, San Diego
San Diego, CA, U.S.A.
On 2/16/2010 5:13 PM, Anil Deane wrote:
> Ok, thanks for the dev version tip. I will do this.
>
> But in following the first part - there is no /Applications/MATLAB_R2008b.app/bin/maci64, although Matlab works fine on my Mac (Nehalem). Is this library needed to be separately installed from mathworks or ???
>
> Anil
>
> On Feb 16, 2010, at 12:13 AM, Jianwu Wang wrote:
>
>
>> Hi Anil,
>>
>> The exception is still 64 bit problem. To work with Matlab 64 bit, DYLD_LIBRARY_PATH need to be export as /Applications/MATLAB_R2008b.app/bin/maci64, not the usual /Applications/MATLAB_R2008b.app/bin/maci. Please re-export DYLD_LIBRARY_PATH and try Kepler again.
>>
>> Also from the exception message, you used the latest release Kepler version, namely 1.0, not the latest developing version which can be gotten by instructions in https://dev.kepler-project.org/developers/teams/build/systems/build-system/extension-build-system. I'm not quite sure the location of the libptmatlab.dylib in Kepler 1.0. Please first replace the new libptmatlab.dylib I attached last email with the /Applications/Kepler-1.0.0/Kepler.app/Kepler/lib/libptmatlab.dylib. If it doesn't work, try create a new directory, namely ptolemy/matlab/, in $Kepler/lib and put the new libptmatlab.dylib there.
>>
>> Best wishes
>>
>> Sincerely yours
>>
>> Jianwu Wang
>> jianwu at sdsc.edu
>> http://users.sdsc.edu/~jianwu/
>>
>> Scientific Workflow Automation Technologies (SWAT) Laboratory
>> San Diego Supercomputer Center
>> University of California, San Diego
>> San Diego, CA, U.S.A.
>>
>>
>> On 2/15/2010 10:06 PM, Anil Deane wrote:
>>
>>> Hi Jianwu,
>>>
>>> thanks for the response. I did just that, and it didn't work. I also copied it to the suitable Matlab directory (the place that the UG says to make the link to). And the error says:
>>>
>>> ptolemy.kernel.util.IllegalActionException: There was a problem invoking the Ptolemy II Matlab interface.
>>> The interface has been tested under Windows and Linux.
>>> The interface requires that Matlab be installed on the local machine and that the ptmatlab shared library available.
>>> Refer to $PTII/ptolemy/matlab/makefile for more information.
>>> in .MatlabExpression.MatlabExpression
>>> Because:
>>> Did not find 'ptmatlab' in path, searched user.home (/Applications/Kepler-1.0.0/Kepler.app/Kepler) user.dir (/Users/deane) and the classpath for 'ptmatlab.dylib', but that was not found either.
>>> classpath was: .:./configs:./lib:./lib/images:./build/kepler.jar:./build/kepler-icons.jar Also tried loadLibrary("ptmatlab", exception for loadLibrary was: java.lang.UnsatisfiedLinkError: /Applications/Kepler-1.0.0/Kepler.app/Kepler/lib/libptmatlab.dylib: Library not loaded: @loader_path/libeng.dylib Referenced from: /Applications/MATLAB_R2008b.app/bin/maci/libptmatlab.dylib Reason: no suitable image found. Did find: /Applications/MATLAB_R2008b.app/bin/maci/libeng.dylib: mach-o, but wrong architecture /Applications/MATLAB_R2008b.app/bin/maci/libeng.dylib: mach-o, but wrong architecture /Applications/MATLAB_R2008b.app/bin/maci/libeng.dylib: mach-o, but wrong architecture
>>> at ptolemy.matlab.Expression.preinitialize(Expression.java:205)
>>> at ptolemy.actor.Director.preinitialize(Director.java:865)
>>> at ptolemy.domains.sdf.kernel.SDFDirector.preinitialize(SDFDirector.java:527)
>>> at ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1103)
>>> at ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:913)
>>> at ptolemy.actor.Manager.initialize(Manager.java:578)
>>> at ptolemy.actor.Manager.execute(Manager.java:321)
>>> at ptolemy.actor.Manager.run(Manager.java:1071)
>>> at ptolemy.actor.Manager$3.run(Manager.java:1112)
>>> Caused by: java.lang.UnsatisfiedLinkError: Did not find 'ptmatlab' in path, searched user.home (/Applications/Kepler-1.0.0/Kepler.app/Kepler) user.dir (/Users/deane) and the classpath for 'ptmatlab.dylib', but that was not found either.
>>> classpath was: .:./configs:./lib:./lib/images:./build/kepler.jar:./build/kepler-icons.jar Also tried loadLibrary("ptmatlab", exception for loadLibrary was: java.lang.UnsatisfiedLinkError: /Applications/Kepler-1.0.0/Kepler.app/Kepler/lib/libptmatlab.dylib: Library not loaded: @loader_path/libeng.dylib Referenced from: /Applications/MATLAB_R2008b.app/bin/maci/libptmatlab.dylib Reason: no suitable image found. Did find: /Applications/MATLAB_R2008b.app/bin/maci/libeng.dylib: mach-o, but wrong architecture /Applications/MATLAB_R2008b.app/bin/maci/libeng.dylib: mach-o, but wrong architecture /Applications/MATLAB_R2008b.app/bin/maci/libeng.dylib: mach-o, but wrong architecture
>>> at ptolemy.data.expr.UtilityFunctions.loadLibrary(UtilityFunctions.java:894)
>>> at ptolemy.matlab.Engine.<clinit>(Engine.java:176)
>>> at ptolemy.matlab.Expression.preinitialize(Expression.java:202)
>>> ... 8 more
>>> Caused by: java.lang.UnsatisfiedLinkError: Expecting an absolute path of the library: ptolemy/matlab/ptmatlab
>>> at java.lang.Runtime.load0(Runtime.java:767)
>>> at java.lang.System.load(System.java:1020)
>>> at ptolemy.data.expr.UtilityFunctions.loadLibrary(UtilityFunctions.java:781)
>>> ... 10 more
>>> Caused by: java.lang.UnsatisfiedLinkError: Did not find 'ptmatlab' in path, searched user.home (/Applications/Kepler-1.0.0/Kepler.app/Kepler) user.dir (/Users/deane) and the classpath for 'ptmatlab.dylib', but that was not found either.
>>> classpath was: .:./configs:./lib:./lib/images:./build/kepler.jar:./build/kepler-icons.jar Also tried loadLibrary("ptmatlab", exception for loadLibrary was: java.lang.UnsatisfiedLinkError: /Applications/Kepler-1.0.0/Kepler.app/Kepler/lib/libptmatlab.dylib: Library not loaded: @loader_path/libeng.dylib Referenced from: /Applications/MATLAB_R2008b.app/bin/maci/libptmatlab.dylib Reason: no suitable image found. Did find: /Applications/MATLAB_R2008b.app/bin/maci/libeng.dylib: mach-o, but wrong architecture /Applications/MATLAB_R2008b.app/bin/maci/libeng.dylib: mach-o, but wrong architecture /Applications/MATLAB_R2008b.app/bin/maci/libeng.dylib: mach-o, but wrong architecture
>>> at ptolemy.data.expr.UtilityFunctions.loadLibrary(UtilityFunctions.java:894)
>>> at ptolemy.matlab.Engine.<clinit>(Engine.java:176)
>>> at ptolemy.matlab.Expression.preinitialize(Expression.java:202)
>>> at ptolemy.actor.Director.preinitialize(Director.java:865)
>>> at ptolemy.domains.sdf.kernel.SDFDirector.preinitialize(SDFDirector.java:527)
>>> at ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1103)
>>> at ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:913)
>>> at ptolemy.actor.Manager.initialize(Manager.java:578)
>>> at ptolemy.actor.Manager.execute(Manager.java:321)
>>> at ptolemy.actor.Manager.run(Manager.java:1071)
>>> at ptolemy.actor.Manager$3.run(Manager.java:1112)
>>> Caused by: java.lang.UnsatisfiedLinkError: Expecting an absolute path of the library: ptolemy/matlab/ptmatlab
>>> at java.lang.Runtime.load0(Runtime.java:767)
>>> at java.lang.System.load(System.java:1020)
>>> at ptolemy.data.expr.UtilityFunctions.loadLibrary(UtilityFunctions.java:781)
>>> ... 10 more
>>>
>>>
>>> Kepler runs fine otherwise (ie. other than the Matlab).
>>>
>>> Anil
>>>
>>>
>>>
>>>
>>> On Feb 15, 2010, at 6:05 PM, Jianwu Wang wrote:
>>>
>>>
>>>
>>>> Hi Anil,
>>>>
>>>> So you have Mac OS 10.6 Snow Leopard and Kepler downloaded from Kepler repository by instructions of https://dev.kepler-project.org/developers/teams/build/systems/build-system/extension-build-system? So your java and Matlab is also 64 bit?
>>>>
>>>> As far as I know, Mac 10.6 is 64 bit system and Kepler mainly support 32 bit system. We met the similar problem when running Matlab actor on a Mac Snow Leopard machine, which is because of the library compiled in 32 bit system does not work with Matlab 64 bit.
>>>>
>>>> We got the lib working with 64 bit system (see attachment). Please replace this lib with the one in $Kepler/common/lib/ptolemy/matlab/ and try again.
>>>>
>>>> Please let me know whether it works for you. Thanks.
>>>>
>>>> Best wishes
>>>>
>>>> Sincerely yours
>>>>
>>>> Jianwu Wang
>>>> jianwu at sdsc.edu
>>>> http://users.sdsc.edu/~jianwu/
>>>>
>>>> Scientific Workflow Automation Technologies (SWAT) Laboratory
>>>> San Diego Supercomputer Center
>>>> University of California, San Diego
>>>> San Diego, CA, U.S.A.
>>>>
>>>>
>>>> On 2/15/2010 5:13 PM, Anil Deane wrote:
>>>>
>>>>
>>>>> [First Post. I have looked in the user guide and in the Kepler matlab example]
>>>>>
>>>>> Could anyone please tell me how to get Kepler run a Matlab example on the Mac. The example and the user guide indicate that one just needs to have the dynamic library path (to maci) set properly. But that doesn't do it. I do have Matlab able to be run from the command prompt incidentally.
>>>>>
>>>>> I searched and found - quite inscrutable - "directions" for patches that someone contributed (because Mac's install of Java is "nonstandard"). I have the latest Mac OS, and the latest Kepler. There are references to Ptolemy and a ptmatlab file when Kepler fails - but nowhere does Kepler user guide or site say that you need to install Ptolemy or that an installation of "ptmatlab" is needed.
>>>>>
>>>>> Thanks in advance,
>>>>>
>>>>> Anil Deane
>>>>> [IntelMac 10.6.2]
>>>>> _______________________________________________
>>>>> Kepler-users mailing list
>>>>> Kepler-users at kepler-project.org
>>>>> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users
>>>>>
>>>>>
>>>>>
>>>> <libptmatlab.dylib>
>>>>
>>>>
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