[kepler-users] new user issue with sshexecutecmd

[Jianwu Wang]

  Hi Mark,

     I attached a workflow to submit jobs to a remote cluster. It works 
on my windows 7 machine. Please have a try. If you find any questions, 
just let me know.

Best wishes

Sincerely yours

Jianwu Wang
jianwu at sdsc.edu
http://users.sdsc.edu/~jianwu/

Assistant Project Scientist
Scientific Workflow Automation Technologies (SWAT) Laboratory
San Diego Supercomputer Center
University of California, San Diego
San Diego, CA, U.S.A.


On 8/31/2010 4:01 PM, Mark Miller wrote:
>
> HI Jianwu,
>
> Thanks.
>
> I am using the new Kepler 2.0.
>
> I would love to have a demo workflow for that….!!
>
> *From:* kepler-users-bounces at kepler-project.org 
> [mailto:kepler-users-bounces at kepler-project.org] *On Behalf Of *Jianwu 
> Wang
> *Sent:* Tuesday, August 31, 2010 3:30 PM
> *To:* kepler-users at kepler-project.org
> *Subject:* Re: [kepler-users] new user issue with sshexecutecmd
>
> Hi Mark,
>
>       Usually the channel index error is not actor related. It could 
> be some error in workflow.
>
>      Which Kepler version you are using? I can send you a demo 
> workflow to deploy jobs to remote machine. I think SSH Execute cmd 
> actor is not the only option. Or I can have a look at your workflow if 
> you want.
>
> Best wishes
>   
> Sincerely yours
>   
> Jianwu Wang
> jianwu at sdsc.edu  <mailto:jianwu at sdsc.edu>
> http://users.sdsc.edu/~jianwu/  <http://users.sdsc.edu/%7Ejianwu/>
>   
> Assistant Project Scientist
> Scientific Workflow Automation Technologies (SWAT) Laboratory
> San Diego Supercomputer Center
> University of California, San Diego
> San Diego, CA, U.S.A.
>
>
> On 8/31/2010 3:17 PM, Mark Miller wrote:
>
> I am a new user, trying to learn how to deploy jobs on remote machines 
> via Kepler.
>
> I am running in WindowsXP environment.
>
> It seems the SSH Execute cmd actor would be the correct one to use.
>
> I set up a simple workflow connecting this actor’s outputs to display 
> screens to see what happens,
>
> Which is what I have done with other actors I am learning to use.
>
> I configured the login creds for the “target” input (these creds work 
> for the SSH Directory Listing actor)
>
> Unlike the other actors I have tried, with this one, I get a fail with 
> the following message:
>
> ptolemy.kernel.util.IllegalActionException: Channel index 0 is out of 
> range, because width is only 0.
>
>   in .ssh_dir.SSH Execute cmd.command
>
>                 at ptolemy.actor.IOPort.get(IOPort.java:849)
>
>                 at 
> org.kepler.actor.ssh.ExecuteCmd.fire(ExecuteCmd.java:368)
>
>                 at ptolemy.actor.AtomicActor.iterate(AtomicActor.java:469)
>
>                 at 
> ptolemy.actor.sched.StaticSchedulingDirector.fire(StaticSchedulingDirector.java:188)
>
>                 at 
> ptolemy.actor.CompositeActor.fire(CompositeActor.java:458)
>
>                 at ptolemy.actor.Manager.iterate(Manager.java:749)
>
>                 at ptolemy.actor.Manager.execute(Manager.java:351)
>
>                 at ptolemy.actor.Manager.run(Manager.java:1162)
>
>                 at ptolemy.actor.Manager$3.run(Manager.java:1215)
>
> I have tried searching/googling all the kepler docs, but can’t find a 
> reference to this message.
>
> Can anyone help?
>
> Mark
>
> Mark A. Miller, PhD
>
> Principal Investigator, Biology
>
> San Diego Supercomputer Center
>
> University of California, San Diego
>
> La Jolla, CA, 92093-0505
>
> Tel: 858-822-0866
>
> Fax: 858-534-5117
>
>   
>   
> _______________________________________________
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> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users
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