[kepler-users] windows paths with ijmacro

[Chad Berkley]

Hi Chris,

I just tried this both on windows xp and osx.  I tried it with a jpg and 
a tiff in several different directories (with spaces and without).  It 
all worked fine for me.  The / and \ should be converted by java.  Could 
you send me your tif file and I can try it?  It looks like imagej is 
complaining about the file format.  Maybe when you transfer it over to 
windows from linux something is getting corrupted, or else imagej on 
linux is smarter than on windows.  Send me your tiff file and I'll give 
it a try.

thanks,
chad


Chris Weed wrote:
> I don't think the ijmacro actor is correctly parsing windows path.
> 
> I have a workflow with an SDF Director and IJMacro actor.
> 
> The IJMacro parameter is:
> C:\kepler-build\workflows\data\lexington\lexington.tif
> 
> On the command-line it outputs:
> name: C:\kepler-build\workflows\data\lexington\lexington.tif
> name(1): C:/kepler-build/workflows/data/lexington/lexington.tif
> 3034 ms. Memory: 212084K Free: 68410K (32%)
> 
> I get the error:
> File is not in TIFF, JPEG, GIF, BMP, DICOM, FITS, PGM,
> ZIP, LUT, ROI or text format, or it is not found.
> 
> This seems to work fine on linux, though.
> Chris
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