[kepler-users] Simultaneous Workflow runnings

Josep Maria Campanera Alsina campaxic at gmail.com
Thu Feb 26 04:18:44 PST 2009


Well,
If that the solution, there is nothing I can do! I'll wait until next
version of Kepler for simultaneous GUI execution ! (by the way when
new version will come up?)

But as it is said, if I run the workflow without GUI and cache it
works: OK! kepler.sh -runwf -nogui -nocache workflow.xml &

However in that case parameters cannot be included, like -x 4 -y
"foo". I posted also this bug in the email list months ago. Chad
Berkley answered: "The problem is that headless kepler uses the
MoMLSimpleApplication which does not accept command line params.
We're going to add a bug about this and try to get it addressed soon.
I'll keep you updated." Any update regarding this problem?

Thank you very much,

Josep Maria,


2009/2/26 Christopher Brooks <cxh at eecs.berkeley.edu>:
> Hi Josep,
> I'm just returning from vacation and catching up on my email, so
> I'm not sure if this was handled or not.
>
> There is a problem with running multiple versions of Kepler because
> of the hsqldb database.  For details, see
> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2315
>
> When you started up the second GUI, did you see a stack trace?
>
> I believe that in Kepler-1.0.0, various efforts were made to create
> shell scripts that would run commands without the GUI and without
> hsqldb, thus avoiding this issue.
> There are some instructions at
> https://dev.kepler-project.org/developers/reference/executing-kepler-from-the-command-line
> but I could not run Kepler-1.0.0 from the command line twice
> and avoid the bug.
>
> Another trick would be to run each instances of Kepler from a separate
> user account.
>
> In the devel tree, the build system is being reworked and some
> of these issues are being addressed.  You could take a look at
> http://mercury.nceas.ucsb.edu/kepler/pipermail/kepler-dev/2009-February/013822.html
> for more information.
>
> _Christopher
>
> Josep Maria Campanera Alsina wrote:
>>
>> Dear users,
>>
>> I've launched a 3-days long workflow with the GUI that uses job
>> command actors in order to submit computational chemistry jobs to a
>> cluster computer. I've noticed that if I open a new GUI and I want to
>> launch a new workflow that run also a job submission it does not work.
>> Rapidly, the new workflow shows the wrapping up message without
>> executing the workflow.
>>
>> Why is that? How can I overcome this? I would like to run
>> simultaneously several workflows with the job submission capability.
>> Is that possible? If I launch both workflows in a non-graphical mode
>> they will run?
>>
>> Thanks a lot,
>>
>> Josep Maria Campanera,
>>
>> I'm running Kepler 1.0.0 (May 2008) under Linux (openSUSE 10.2, X86-64)
>>
>> ---------------------------------------------
>> Josep Maria Campanera Alsina
>> Professor Lector
>> Departament de Fisicoquímica
>> Facultat de Farmàcia
>> Universitat de Barcelona
>> Avgda Joan XXIII, s/n
>> 08028 Barcelona · Catalonia · Spain
>> Tel: +34 93 4035985
>> Fax: +34 93 4035987
>> campanera at ub.edu
>> --------------------------------------------
>> _______________________________________________
>> Kepler-users mailing list
>> Kepler-users at kepler-project.org
>> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users
>
> --
> Christopher Brooks (cxh at eecs berkeley edu) University of California
> CHESS Executive Director                      US Mail: 337 Cory Hall
> Programmer/Analyst CHESS/Ptolemy/Trust        Berkeley, CA 94720-1774
> ph: 510.643.9841 fax:510.642.2718             (Office: 545Q Cory)
> home: (F-Tu) 707.665.0131 (W-F) 510.655.5480
>



-- 
---------------------------------------------
Josep Maria Campanera Alsina
Professor Lector
Departament de Fisicoquímica
Facultat de Farmàcia
Universitat de Barcelona
Avgda Joan XXIII, s/n
08028 Barcelona · Catalonia · Spain
Tel: +34 93 4035985
Fax: +34 93 4035987
campanera at ub.edu
--------------------------------------------



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