From yogini_joshi at persistent.co.in Sun Sep 1 22:49:13 2013 From: yogini_joshi at persistent.co.in (Yogini Joshi) Date: Mon, 2 Sep 2013 05:49:13 +0000 Subject: [kepler-dev] Extending kepler for project use Message-ID: <741CEB36EC28BA419CD6CDF3B8BB31460753CA97@HJ-MBX2.persistent.co.in> Hi, We would like to extend kepler functionality for project specific purpose. Kepler Class which initializes various classes , Instead of using kepler class for initialization can we write our initialization class ? Regards, Yogini DISCLAIMER ========== This e-mail may contain privileged and confidential information which is the property of Persistent Systems Ltd. It is intended only for the use of the individual or entity to which it is addressed. If you are not the intended recipient, you are not authorized to read, retain, copy, print, distribute or use this message. If you have received this communication in error, please notify the sender and delete all copies of this message. Persistent Systems Ltd. does not accept any liability for virus infected mails. -------------- next part -------------- An HTML attachment was scrubbed... URL: From cxh at eecs.berkeley.edu Mon Sep 2 10:34:23 2013 From: cxh at eecs.berkeley.edu (Christopher Brooks) Date: Mon, 02 Sep 2013 10:34:23 -0700 Subject: [kepler-dev] Update quick links on the kepler site Message-ID: <5224CC1F.5020106@eecs.berkeley.edu> https://kepler-project.org/developers/reference has quick links on the right that are dead. The NMI build is toast, as are Open Bugs. I suggest: Nightly Build Javadoc Bugs I'm not sure how to edit the sidebar. _Christopher -- Christopher Brooks, PMP University of California Academic Program Manager & Software Engineer US Mail: 337 Cory Hall CHESS/iCyPhy/Ptolemy/TerraSwarm Berkeley, CA 94720-1774 cxh at eecs.berkeley.edu, 707.332.0670 (Office: 545Q Cory) From sitongia at ucar.edu Thu Sep 5 14:59:29 2013 From: sitongia at ucar.edu (Leonard Sitongia) Date: Thu, 05 Sep 2013 15:59:29 -0600 Subject: [kepler-dev] Starting out build problems Message-ID: <5228FEC1.80308@ucar.edu> I'm trying to build Kepler from sources for the first time. CentOS release 6.4 (Final) java version "1.7.0_15" Apache Ant(TM) version 1.8.4 compiled on May 22 2012 278 mkdir kepler.modules 279 cd kepler.modules 280 svn co https://code.kepler-project.org/code/kepler/trunk/modules/build-area 281 cd build-area 282 ant change-to -Dsuite=kepler 283 ant run 284 ant force-ptolemy compile ant run gives me [sitongia at geranium build-area]$ ant run Buildfile: /home/sitongia/src/kepler.modules/build-area/build.xml compile: [echo] Note that you may need to run "ant force-ptolemy compile" to compile ptolemy. [compile] Compiling configuration-manager... [compile] Compiling 15 source files to /home/sitongia/src/kepler.modules/configuration-manager/target/classes [compile] /home/sitongia/src/kepler.modules/configuration-manager/src/org/kepler/configuration/ConfigurationManager.java:43: error: package ptolemy.util does not exist [compile] import ptolemy.util.MessageHandler; [compile] ^ [compile] /home/sitongia/src/kepler.modules/configuration-manager/src/org/kepler/configuration/ConfigurationManager.java:111: error: cannot find symbol [compile] MessageHandler.error("Error loading configurations", e); [compile] ^ [compile] symbol: variable MessageHandler [compile] location: class ConfigurationManager [compile] 2 errors BUILD FAILED /home/sitongia/src/kepler.modules/build-area/build.xml:52: /home/sitongia/src/kepler.modules/build-area/build.xml:52: Compile failed; see the compiler error output for details. I tried the force compile of ptolemy, but that gives me the same thing. I also tried this with the 2.4 release branch, but I get the same error. Do I need to use Java 1.6 and Ant 1.7? Thanks! -- ==Leonard E. Sitongia High Altitude Observatory National Center for Atmospheric Research P.O. Box 3000 Boulder CO 80307 USA sitongia at ucar.edu voice: (303)497-2454 fax: (303)497-1589 From sitongia at ucar.edu Thu Sep 5 15:05:05 2013 From: sitongia at ucar.edu (Leonard Sitongia) Date: Thu, 05 Sep 2013 16:05:05 -0600 Subject: [kepler-dev] Starting out build problems In-Reply-To: <5228FEC1.80308@ucar.edu> References: <5228FEC1.80308@ucar.edu> Message-ID: <52290011.7010501@ucar.edu> On 09/05/2013 03:59 PM, Leonard Sitongia wrote: > I tried the force compile of ptolemy, but that gives me the same thing. Uh, I'm reading the detailed instructions now. svn is blocked to get ptolemy. I'm getting that manually now. It goes in at the kepler level, not build-area, right? -- ==Leonard E. Sitongia High Altitude Observatory National Center for Atmospheric Research P.O. Box 3000 Boulder CO 80307 USA sitongia at ucar.edu voice: (303)497-2454 fax: (303)497-1589 From charliec at sdsc.edu Fri Sep 6 11:35:05 2013 From: charliec at sdsc.edu (Charles Cowart) Date: Fri, 6 Sep 2013 11:35:05 -0700 Subject: [kepler-dev] Starting out build problems In-Reply-To: <52290011.7010501@ucar.edu> References: <5228FEC1.80308@ucar.edu> <52290011.7010501@ucar.edu> Message-ID: Hi Leonard, I believe that is the case. My own Kepler instance has ptolemy co-level with build-area. Charles On Sep 5, 2013, at 3:05 PM, Leonard Sitongia wrote: > > On 09/05/2013 03:59 PM, Leonard Sitongia wrote: >> I tried the force compile of ptolemy, but that gives me the same thing. > > Uh, I'm reading the detailed instructions now. svn is blocked to get ptolemy. I'm getting that manually now. It goes in at the kepler level, not build-area, right? > > -- > ==Leonard E. Sitongia > High Altitude Observatory > National Center for Atmospheric Research > P.O. Box 3000 Boulder CO 80307 USA > sitongia at ucar.edu voice: (303)497-2454 fax: (303)497-1589 > > _______________________________________________ > Kepler-dev mailing list > Kepler-dev at kepler-project.org > http://lists.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-dev From sitongia at ucar.edu Tue Sep 10 14:15:43 2013 From: sitongia at ucar.edu (Leonard Sitongia) Date: Tue, 10 Sep 2013 15:15:43 -0600 Subject: [kepler-dev] Starting out build problems In-Reply-To: <52290011.7010501@ucar.edu> References: <5228FEC1.80308@ucar.edu> <52290011.7010501@ucar.edu> Message-ID: <522F8BFF.9010902@ucar.edu> Hi again, I'm trying everything on Windows 7 now. using Cygwin. I have Kepler installed, and manually got Ptolemy, too. When I do "ant compile" I get missing libraries: [compile] Compiling ptolemy... [compile] Compiling 2347 source files to C:\Users\sitongia\Projects\kepler\ptolemy\target\classes [compile] C:\Users\sitongia\Projects\kepler\ptolemy\src\diva\util\java2d\svg\SVGPaintedObject.java :46: error: package org.apache.batik.gvt does not exist [compile] import org.apache.batik.gvt.GraphicsNode; ... [compile] location: class SVGPaintedObject [compile] C:\Users\sitongia\Projects\kepler\ptolemy\src\diva\util\java2d\test\junit\Polygon2DJUnit Test.java:31: error: package org.junit does not exist [compile] import org.junit.Assert; ... [compile] C:\Users\sitongia\Projects\kepler\ptolemy\src\ptolemy\actor\gui\python\PythonShellTablea u.java:35: error: package org.python.core does not exist [compile] import org.python.core.PyObject; ... lots more. So, something big is missing. If it isn't clear, I'll start over and collect all the output so that I can see if something earlier failed. Thanks! -- ==Leonard E. Sitongia High Altitude Observatory National Center for Atmospheric Research P.O. Box 3000 Boulder CO 80307 USA sitongia at ucar.edu voice: (303)497-2454 fax: (303)497-1589 From sitongia at ucar.edu Tue Sep 10 15:40:56 2013 From: sitongia at ucar.edu (Leonard Sitongia) Date: Tue, 10 Sep 2013 16:40:56 -0600 Subject: [kepler-dev] Starting out build problems In-Reply-To: <522F8BFF.9010902@ucar.edu> References: <5228FEC1.80308@ucar.edu> <52290011.7010501@ucar.edu> <522F8BFF.9010902@ucar.edu> Message-ID: <522F9FF8.8070502@ucar.edu> Trying again, starting from scratch. Captured all output from "ant change-to". I'm trying to build the latest (not 1.0 or 2.4). No error messages up to or through running change-to. Then, I run "ant compile". This time it worked. So, I now have the latest building on Windows 7 under Cygwin. Nevermind about my trouble. Must have been some intermediate action I'd taken to get ptolemy installed separately because of the firewall issue. -- ==Leonard E. Sitongia High Altitude Observatory National Center for Atmospheric Research P.O. Box 3000 Boulder CO 80307 USA sitongia at ucar.edu voice: (303)497-2454 fax: (303)497-1589 From michalo at man.poznan.pl Fri Sep 13 01:45:20 2013 From: michalo at man.poznan.pl (Michal Owsiak) Date: Fri, 13 Sep 2013 10:45:20 +0200 Subject: [kepler-dev] Retrieving all the actors available for particular Kepler installation Message-ID: <5232D0A0.4040304@man.poznan.pl> Hi, I have question regarding the list of actors available inside particular Kepler installation. Let's assume that I have Kepler installation (default one) and I want to list all the actors that are available inside Kepler (the list you can see on the left where actors can be searched for). Is there any way to retrieve this list? Is there any Kepler API for this task? Can I find this information inside Kepler's DB or inside cache system? Thanks in advance for the info. Michal -- Michal Owsiak Institute of Bioorganic Chemistry PAS Poznan Supercomputing and Networking Center Noskowskiego 12/14, 61-704 Poznan, POLAND http://www.man.poznan.pl From cxh at eecs.berkeley.edu Fri Sep 13 07:08:39 2013 From: cxh at eecs.berkeley.edu (Christopher Brooks) Date: Fri, 13 Sep 2013 07:08:39 -0700 Subject: [kepler-dev] Retrieving all the actors available for particular Kepler installation In-Reply-To: <5232D0A0.4040304@man.poznan.pl> References: <5232D0A0.4040304@man.poznan.pl> Message-ID: <52331C67.70608@eecs.berkeley.edu> Hi Michal, I know how it is done in Ptolemy II, and the same techniques should work with Kepler. The set of actors that are available are determined by ptolemy.actor.gui.Configuration. If a model is running in a system that has a Configuration, then to get the Configuration: >

To access the configuration from a random place, if you have a > NamedObj foo, then you can call: >

>  Effigy effigy = Configuration.findEffigy(foo.toplevel());
>  Configuration configuration = effigy.toplevel();
>

Configuration.check() traverses the configuration for various tests, below are some fragments from it: > // Check TypedAtomicActors and Attributes > Iterator containedObjects = deepNamedObjList().iterator(); > while (containedObjects.hasNext()) { > NamedObj containedObject = (NamedObj) containedObjects.next(); Or, to get just the composites: > for (CompositeEntity composite : deepCompositeEntityList()) { or > // Check atomic actors for clone problems related to types > List entityList = allAtomicEntityList(); > Iterator entities = entityList.iterator(); > while (entities.hasNext()) { > Object entity = entities.next(); > if (entity instanceof TypedAtomicActor) { See ptolemy/configs/test/allConfigs.tcl for tests that read the various configurations and perform tests on them. See https://kepler-project.org/developers/reference/what-happens-when-kepler-starts-up for information about how Kepler starts up and which configuration is read. There is a chance that Kepler's database adds actors that are not accessible via the configuration. _Christopher On 9/13/13 1:45 AM, Michal Owsiak wrote: > Hi, > > I have question regarding the list of actors available inside > particular Kepler installation. > > Let's assume that I have Kepler installation (default one) and I want > to list all the actors that are available inside Kepler (the list you > can see on the left where actors can be searched for). > > Is there any way to retrieve this list? Is there any Kepler API for > this task? Can I find this information inside Kepler's DB or inside > cache system? > > Thanks in advance for the info. > > Michal > -- Christopher Brooks, PMP University of California Academic Program Manager & Software Engineer US Mail: 337 Cory Hall CHESS/iCyPhy/Ptolemy/TerraSwarm Berkeley, CA 94720-1774 cxh at eecs.berkeley.edu, 707.332.0670 (Office: 545Q Cory) From michalo at man.poznan.pl Sat Sep 14 11:41:44 2013 From: michalo at man.poznan.pl (Michal Owsiak) Date: Sat, 14 Sep 2013 20:41:44 +0200 Subject: [kepler-dev] Retrieving all the actors available for particular Kepler installation In-Reply-To: <52331C67.70608@eecs.berkeley.edu> References: <5232D0A0.4040304@man.poznan.pl> <52331C67.70608@eecs.berkeley.edu> Message-ID: <5234ADE8.2050705@man.poznan.pl> Thanks for the info. I will take a look at this and let you know whether this solves my issue. Cheers > Hi Michal, > > I know how it is done in Ptolemy II, and the same techniques should work > with Kepler. > > The set of actors that are available are determined by > ptolemy.actor.gui.Configuration. > > If a model is running in a system that has a Configuration, then to get > the Configuration: > >>

To access the configuration from a random place, if you have a >> NamedObj foo, then you can call: >>

>>  Effigy effigy = Configuration.findEffigy(foo.toplevel());
>>  Configuration configuration = effigy.toplevel();
>>

> > Configuration.check() traverses the configuration for various tests, > below are some fragments from it: > >> // Check TypedAtomicActors and Attributes >> Iterator containedObjects = deepNamedObjList().iterator(); >> while (containedObjects.hasNext()) { >> NamedObj containedObject = (NamedObj) >> containedObjects.next(); > Or, to get just the composites: > >> for (CompositeEntity composite : deepCompositeEntityList()) { > > or >> // Check atomic actors for clone problems related to types >> List entityList = allAtomicEntityList(); >> Iterator entities = entityList.iterator(); >> while (entities.hasNext()) { >> Object entity = entities.next(); >> if (entity instanceof TypedAtomicActor) { > > See ptolemy/configs/test/allConfigs.tcl for tests that read the various > configurations and perform tests on them. > > See > https://kepler-project.org/developers/reference/what-happens-when-kepler-starts-up > for information about how Kepler starts up and which configuration is read. > > There is a chance that Kepler's database adds actors that are not > accessible via the configuration. > > > _Christopher > > > > On 9/13/13 1:45 AM, Michal Owsiak wrote: >> Hi, >> >> I have question regarding the list of actors available inside >> particular Kepler installation. >> >> Let's assume that I have Kepler installation (default one) and I want >> to list all the actors that are available inside Kepler (the list you >> can see on the left where actors can be searched for). >> >> Is there any way to retrieve this list? Is there any Kepler API for >> this task? Can I find this information inside Kepler's DB or inside >> cache system? >> >> Thanks in advance for the info. >> >> Michal >> > > From jones at nceas.ucsb.edu Sat Sep 14 12:33:58 2013 From: jones at nceas.ucsb.edu (Matt Jones) Date: Sat, 14 Sep 2013 11:33:58 -0800 Subject: [kepler-dev] Retrieving all the actors available for particular Kepler installation In-Reply-To: <5234ADE8.2050705@man.poznan.pl> References: <5232D0A0.4040304@man.poznan.pl> <52331C67.70608@eecs.berkeley.edu> <5234ADE8.2050705@man.poznan.pl> Message-ID: It works much differently in Kepler. We index actors against the ontology categories, and none of it is in the Configuration. I don't remeber if there is an external API, but there is an internal class representing the library. I'd have to poke around to remember. Matt On Sep 14, 2013 10:42 AM, "Michal Owsiak" wrote: > Thanks for the info. > > I will take a look at this and let you know whether this solves my issue. > > Cheers > >> Hi Michal, >> >> I know how it is done in Ptolemy II, and the same techniques should work >> with Kepler. >> >> The set of actors that are available are determined by >> ptolemy.actor.gui.**Configuration. >> >> If a model is running in a system that has a Configuration, then to get >> the Configuration: >> >>

To access the configuration from a random place, if you have a >>> NamedObj foo, then you can call: >>>

>>>  Effigy effigy = Configuration.findEffigy(foo.**toplevel());
>>>  Configuration configuration = effigy.toplevel();
>>>