[kepler-dev] build problems

Daniel Crawl danielcrawl at gmail.com
Thu Aug 9 11:15:56 PDT 2012 

Hi Derik,

It looks like I created this bug in r30183. Sorry about that.
I was able to reproduce it by removing build-area/modules.txt.

I checked in a fix; let me know if there are still problems.

   --dan

On 8/9/12 9:58 AM, Jianwu Wang wrote:
> Hi Derik,
>
>      I can reproduce the error message with a fresh check out. Kepler
> can still be checked out but cannot be started. I'll look into it and
> see whether my changes cause it.
>
> Best wishes
>
> Sincerely yours
>
> Jianwu Wang, Ph.D.
> jianwu at sdsc.edu
> http://users.sdsc.edu/~jianwu/
>
> Assistant Project Scientist
> Scientific Workflow Automation Technologies (SWAT) Laboratory
> San Diego Supercomputer Center
> University of California, San Diego
> San Diego, CA, U.S.A.
>
> On 8/8/12 6:38 PM, Derik Barseghian wrote:
>> The problem has resumed on linux with a new kepler-tasks.jar being
>> checked in today.
>> Jianwu, do you think any of the code you've recently added that
>> utilizes ProjectLocation could be causing this?
>> It sounds like Dan and Christopher don't see the problem I do on
>> linux. I see it on two different linux boxes though, so maybe it
>> requires a fresh checkout or clean-all to manifest.
>>
>> On Aug 7, 2012, at 11:21 PM, Derik Barseghian
>> <barseghian at nceas.ucsb.edu> wrote:
>>
>>> I found reverting kepler-task.jar to before r30353 allows linux to
>>> launch kepler, but a similar error about missing modules.txt still
>>> appears on initial ant change-to -Dsuite=kepler. We'll have to look
>>> at this further.
>>>
>>> barseghian at ubuntu:~/dev2/kepler.modules.temp/build-area$ ant
>>> change-to -Dsuite=kepler
>>> Buildfile: build.xml
>>>
>>> change-to:
>>> [change-to] java.io.FileNotFoundException:
>>> /home/barseghian/dev2/kepler.modules.temp/build-area/modules.txt (No
>>> such file or directory)
>>> [change-to]     at java.io.FileInputStream.open(Native Method)
>>> [change-to]     at
>>> java.io.FileInputStream.<init>(FileInputStream.java:120)
>>> [change-to]     at java.io.FileReader.<init>(FileReader.java:55)
>>> [change-to]     at
>>> org.kepler.build.modules.ModulesTxt.readHelper(ModulesTxt.java:161)
>>> [change-to]     at
>>> org.kepler.build.modules.ModulesTxt.read(ModulesTxt.java:145)
>>> [change-to]     at
>>> org.kepler.build.modules.ModulesTxt.init(ModulesTxt.java:58)
>>> [change-to]     at
>>> org.kepler.build.modules.ModuleTree.init(ModuleTree.java:103)
>>> [change-to]     at
>>> org.kepler.build.modules.ModuleTree.instance(ModuleTree.java:93)
>>> [change-to]     at
>>> org.kepler.util.DotKeplerManager.initialize(DotKeplerManager.java:132)
>>> [change-to]     at
>>> org.kepler.util.DotKeplerManager.getInstance(DotKeplerManager.java:110)
>>> [change-to]     at
>>> org.kepler.build.project.ProjectLocator.getUserKeplerModulesDir(ProjectLocator.java:102)
>>>
>>> [change-to]     at
>>> org.kepler.build.project.ProjectLocator.setKeplerModulesDir(ProjectLocator.java:79)
>>>
>>> [change-to]     at
>>> org.kepler.build.modules.ModulesTask.init(ModulesTask.java:76)
>>> [change-to]     at
>>> org.apache.tools.ant.ComponentHelper.createComponent(ComponentHelper.java:223)
>>>
>>> [change-to]     at
>>> org.apache.tools.ant.UnknownElement.makeObject(UnknownElement.java:414)
>>> [change-to]     at
>>> org.apache.tools.ant.UnknownElement.maybeConfigure(UnknownElement.java:160)
>>>
>>> [change-to]     at org.apache.tools.ant.Task.perform(Task.java:347)
>>> [change-to]     at org.apache.tools.ant.Target.execute(Target.java:357)
>>> [change-to]     at
>>> org.apache.tools.ant.Target.performTasks(Target.java:385)
>>> [change-to]     at
>>> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1337)
>>> [change-to]     at
>>> org.apache.tools.ant.Project.executeTarget(Project.java:1306)
>>> [change-to]     at
>>> org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
>>>
>>> [change-to]     at
>>> org.apache.tools.ant.Project.executeTargets(Project.java:1189)
>>> [change-to]     at org.apache.tools.ant.Main.runBuild(Main.java:758)
>>> [change-to]     at org.apache.tools.ant.Main.startAnt(Main.java:217)
>>> [change-to]     at
>>> org.apache.tools.ant.launch.Launcher.run(Launcher.java:257)
>>> [change-to]     at
>>> org.apache.tools.ant.launch.Launcher.main(Launcher.java:104)
>>>
>>> On Aug 7, 2012, at 7:42 PM, Derik Barseghian
>>> <barseghian at nceas.ucsb.edu> wrote:
>>>
>>>> I haven't been following kepler closely today, but I've updated now
>>>> and have problems -- on linux I get some errors and can't launch. On
>>>> mac I get some errors but can launch.
>>>>
>>>> LINUX:
>>>> On a fresh checkout, doing ant change-to -Dsuite=kepler you see an
>>>> error go past (note build-area/build-area/ in path) :
>>>>
>>>>      [run] WARNING: Using virtual project location.
>>>>      [run] java.io.FileNotFoundException:
>>>> /home/barseghian/dev2/kepler.modules/build-area/build-area/modules.txt
>>>> (No such file or directory)
>>>>      [run]     at java.io.FileInputStream.open(Native Method)
>>>>      [run]     at
>>>> java.io.FileInputStream.<init>(FileInputStream.java:120)
>>>>      [run]     at java.io.FileReader.<init>(FileReader.java:55)
>>>>      [run]     at
>>>> org.kepler.build.modules.ModulesTxt.readHelper(ModulesTxt.java:161)
>>>>      [run]     at
>>>> org.kepler.build.modules.ModulesTxt.read(ModulesTxt.java:145)
>>>>      [run]     at
>>>> org.kepler.build.modules.ModulesTxt.init(ModulesTxt.java:58)
>>>>      [run]     at
>>>> org.kepler.build.modules.ModuleTree.init(ModuleTree.java:103)
>>>>      [run]     at
>>>> org.kepler.build.modules.ModuleTree.instance(ModuleTree.java:93)
>>>>      [run]     at
>>>> org.kepler.util.DotKeplerManager.initialize(DotKeplerManager.java:132)
>>>>      [run]     at
>>>> org.kepler.util.DotKeplerManager.getInstance(DotKeplerManager.java:110)
>>>>      [run]     at
>>>> org.kepler.build.project.ProjectLocator.getUserKeplerModulesDir(ProjectLocator.java:102)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.project.ProjectLocator.setKeplerModulesDir(ProjectLocator.java:79)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.project.ProjectLocator.getBuildDir(ProjectLocator.java:193)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.project.ProjectLocator.shouldUtilizeUserKeplerModules(ProjectLocator.java:92)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.project.MemoryProperties.<init>(MemoryProperties.java:27)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.project.MemoryProperties.instance(MemoryProperties.java:67)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.project.MemoryProperties.getMaxMemory(MemoryProperties.java:84)
>>>>
>>>>      [run]     at org.kepler.build.Run.<init>(Run.java:71)
>>>>      [run]     at
>>>> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
>>>>      [run]     at
>>>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
>>>>
>>>>      [run]     at
>>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
>>>>
>>>>      [run]     at
>>>> java.lang.reflect.Constructor.newInstance(Constructor.java:513)
>>>>
>>>>
>>>> things proceed to checkout, but ant run eventually bombs:
>>>>
>>>>      [run] java.lang.NullPointerException
>>>>      [run]     at
>>>> org.kepler.build.project.RepositoryLocations.getLocation(RepositoryLocations.java:115)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.modules.Module.<init>(Module.java:185)
>>>>      [run]     at org.kepler.build.modules.Suite.<init>(Suite.java:71)
>>>>      [run]     at org.kepler.build.modules.Node.<init>(Node.java:49)
>>>>      [run]     at
>>>> org.kepler.build.modules.ModuleTree.<init>(ModuleTree.java:54)
>>>>      [run]     at
>>>> org.kepler.build.modules.ModuleTree.init(ModuleTree.java:106)
>>>>      [run]     at
>>>> org.kepler.build.modules.ModuleTree.instance(ModuleTree.java:93)
>>>>      [run]     at
>>>> org.kepler.util.DotKeplerManager.initialize(DotKeplerManager.java:132)
>>>>      [run]     at
>>>> org.kepler.util.DotKeplerManager.getInstance(DotKeplerManager.java:110)
>>>>      [run]     at
>>>> org.kepler.build.project.ProjectLocator.getUserKeplerModulesDir(ProjectLocator.java:102)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.project.ProjectLocator.setKeplerModulesDir(ProjectLocator.java:79)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.project.ProjectLocator.getBuildDir(ProjectLocator.java:193)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.project.ProjectLocator.shouldUtilizeUserKeplerModules(ProjectLocator.java:92)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.project.MemoryProperties.<init>(MemoryProperties.java:27)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.project.MemoryProperties.instance(MemoryProperties.java:67)
>>>>
>>>>      [run]     at
>>>> org.kepler.build.project.MemoryProperties.getMaxMemory(MemoryProperties.java:84)
>>>>
>>>>      [run]     at org.kepler.build.Run.<init>(Run.java:71)
>>>>      [run]     at
>>>> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
>>>>      [run]     at
>>>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
>>>>
>>>>      [run]     at
>>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
>>>>
>>>>      [run]     at
>>>> java.lang.reflect.Constructor.newInstance(Constructor.java:513)
>>>>      [run]     at
>>>> org.apache.tools.ant.AntTypeDefinition.innerCreateAndSet(AntTypeDefinition.java:311)
>>>>
>>>>      [run]     at
>>>> org.apache.tools.ant.AntTypeDefinition.createAndSet(AntTypeDefinition.java:257)
>>>>
>>>>      [run]     at
>>>> org.apache.tools.ant.AntTypeDefinition.icreate(AntTypeDefinition.java:202)
>>>>
>>>>      [run]     at
>>>> org.apache.tools.ant.AntTypeDefinition.create(AntTypeDefinition.java:189)
>>>>
>>>>      [run]     at
>>>> org.apache.tools.ant.ComponentHelper.createComponent(ComponentHelper.java:238)
>>>>
>>>>      [run]     at
>>>> org.apache.tools.ant.ComponentHelper.createComponent(ComponentHelper.java:216)
>>>>
>>>>      [run]     at
>>>> org.apache.tools.ant.UnknownElement.makeObject(UnknownElement.java:414)
>>>>      [run]     at
>>>> org.apache.tools.ant.UnknownElement.maybeConfigure(UnknownElement.java:160)
>>>>
>>>>      [run]     at org.apache.tools.ant.Task.perform(Task.java:347)
>>>>      [run]     at org.apache.tools.ant.Target.execute(Target.java:357)
>>>>      [run]     at
>>>> org.apache.tools.ant.Target.performTasks(Target.java:385)
>>>>      [run]     at
>>>> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1337)
>>>>      [run]     at
>>>> org.apache.tools.ant.Project.executeTarget(Project.java:1306)
>>>>      [run]     at
>>>> org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
>>>>
>>>>      [run]     at
>>>> org.apache.tools.ant.Project.executeTargets(Project.java:1189)
>>>>      [run]     at org.apache.tools.ant.Main.runBuild(Main.java:758)
>>>>      [run]     at org.apache.tools.ant.Main.startAnt(Main.java:217)
>>>>      [run]     at
>>>> org.apache.tools.ant.launch.Launcher.run(Launcher.java:257)
>>>>      [run]     at
>>>> org.apache.tools.ant.launch.Launcher.main(Launcher.java:104)
>>>>      [run] Module Directory could not be created
>>>>
>>>> You end up with a build-area/build-area dir.
>>>>
>>>> MAC
>>>> With a fresh checkout you see a similar error go past:
>>>>
>>>> quirk:build-area derik$ ant change-to -Dsuite=kepler
>>>> Buildfile: /Users/derik/dev2/kepler.modules.temp/build-area/build.xml
>>>>
>>>> change-to:
>>>> [change-to] java.io.FileNotFoundException:
>>>> /Users/derik/dev2/kepler.modules.temp/build-area/modules.txt (No
>>>> such file or directory)
>>>> [change-to]     at java.io.FileInputStream.open(Native Method)
>>>> [change-to]     at
>>>> java.io.FileInputStream.<init>(FileInputStream.java:120)
>>>> [change-to]     at java.io.FileReader.<init>(FileReader.java:55)
>>>> [change-to]     at
>>>> org.kepler.build.modules.ModulesTxt.readHelper(ModulesTxt.java:161)
>>>> [change-to]     at
>>>> org.kepler.build.modules.ModulesTxt.read(ModulesTxt.java:145)
>>>> [change-to]     at
>>>> org.kepler.build.modules.ModulesTxt.init(ModulesTxt.java:58)
>>>> [change-to]     at
>>>> org.kepler.build.modules.ModuleTree.init(ModuleTree.java:103)
>>>> [change-to]     at
>>>> org.kepler.build.modules.ModuleTree.instance(ModuleTree.java:93)
>>>> [change-to]     at
>>>> org.kepler.util.DotKeplerManager.initialize(DotKeplerManager.java:132)
>>>> [change-to]     at
>>>> org.kepler.util.DotKeplerManager.getInstance(DotKeplerManager.java:110)
>>>> [change-to]     at
>>>> org.kepler.build.project.ProjectLocator.getUserKeplerModulesDir(ProjectLocator.java:102)
>>>>
>>>> [change-to]     at
>>>> org.kepler.build.project.ProjectLocator.setKeplerModulesDir(ProjectLocator.java:79)
>>>>
>>>> [change-to]     at
>>>> org.kepler.build.modules.ModulesTask.init(ModulesTask.java:76)
>>>> [change-to]     at
>>>> org.apache.tools.ant.ComponentHelper.createComponent(ComponentHelper.java:271)
>>>>
>>>> [change-to]     at
>>>> org.apache.tools.ant.UnknownElement.makeObject(UnknownElement.java:417)
>>>> [change-to]     at
>>>> org.apache.tools.ant.UnknownElement.maybeConfigure(UnknownElement.java:163)
>>>>
>>>> [change-to]     at org.apache.tools.ant.Task.perform(Task.java:347)
>>>> [change-to]     at org.apache.tools.ant.Target.execute(Target.java:392)
>>>> [change-to]     at
>>>> org.apache.tools.ant.Target.performTasks(Target.java:413)
>>>> [change-to]     at
>>>> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
>>>> [change-to]     at
>>>> org.apache.tools.ant.Project.executeTarget(Project.java:1368)
>>>> [change-to]     at
>>>> org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
>>>>
>>>> [change-to]     at
>>>> org.apache.tools.ant.Project.executeTargets(Project.java:1251)
>>>> [change-to]     at org.apache.tools.ant.Main.runBuild(Main.java:811)
>>>> [change-to]     at org.apache.tools.ant.Main.startAnt(Main.java:217)
>>>> [change-to]     at
>>>> org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
>>>> [change-to]     at
>>>> org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)
>>>>
>>>>
>>>> but ant run starts up kepler, and no build-area/build-area.
>>>> _______________________________________________
>>>> Kepler-dev mailing list
>>>> Kepler-dev at kepler-project.org
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>
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