[kepler-dev] [Bug 5442] New: View->Automate Layout doesn't work in kepler-2.3 branch

Thu Jul 14 18:56:19 PDT 2011

http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5442

           Summary: View->Automate Layout doesn't work in kepler-2.3
                    branch
           Product: Kepler
           Version: 2.2.0
          Platform: Other
        OS/Version: All
            Status: NEW
          Severity: normal
          Priority: P2
         Component: general
        AssignedTo: david.v.welker at gmail.com
        ReportedBy: barseghian at nceas.ucsb.edu
         QAContact: kepler-dev at kepler-project.org
   Estimated Hours: 0.0

A bunch of ptolemy jars aren't added to the classpath when using the kepler-2.3
branch. This causes at least one problem, View->Automate Layout doesn't work.

If you:
ant change-to -Dsuite=kepler-2.3;
ant run;
Then use: View->Automate Layout

You get an error:
      [run] java.lang.Exception: Failed to invoke layout graph dialog class
"ptolemy.vergil.basic.layout.KielerLayoutAction", which was read from the
configuration.
      [run]     at
ptolemy.vergil.basic.BasicGraphFrame.layoutGraph(BasicGraphFrame.java:1146)
      [run]     at
ptolemy.vergil.actor.ActorGraphFrame$LayoutAction.actionPerformed(ActorGraphFrame.java:758)
      [run]     at
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
      [run]     at
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
      [run]     at
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
      [run]     at
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
      [run]     at javax.swing.AbstractButton.doClick(AbstractButton.java:389)
      [run]     at
com.apple.laf.ScreenMenuItem.actionPerformed(ScreenMenuItem.java:95)
      [run]     at java.awt.MenuItem.processActionEvent(MenuItem.java:627)
      [run]     at java.awt.MenuItem.processEvent(MenuItem.java:586)
      [run]     at
java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:337)
      [run]     at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:325)
      [run]     at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:682)
      [run]     at java.awt.EventQueue.access$000(EventQueue.java:85)
      [run]     at java.awt.EventQueue$1.run(EventQueue.java:638)
      [run]     at java.awt.EventQueue$1.run(EventQueue.java:636)
      [run]     at java.security.AccessController.doPrivileged(Native Method)
      [run]     at
java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
      [run]     at
java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
      [run]     at java.awt.EventQueue$2.run(EventQueue.java:652)
      [run]     at java.awt.EventQueue$2.run(EventQueue.java:650)
      [run]     at java.security.AccessController.doPrivileged(Native Method)
      [run]     at
java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
      [run]     at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
      [run]     at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
      [run]     at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
      [run]     at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
      [run]     at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
      [run]     at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
      [run]     at
java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
      [run] Caused by: java.lang.NoClassDefFoundError:
de/cau/cs/kieler/core/KielerException
      [run]     at
ptolemy.vergil.basic.layout.KielerLayoutAction.doAction(KielerLayoutAction.java:139)
      [run]     at
ptolemy.vergil.basic.BasicGraphFrame.layoutGraph(BasicGraphFrame.java:1141)
      [run]     ... 29 more
      [run] Caused by: java.lang.ClassNotFoundException:
de.cau.cs.kieler.core.KielerException
      [run]     at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
      [run]     at java.security.AccessController.doPrivileged(Native Method)
      [run]     at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
      [run]     at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
      [run]     at
sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
      [run]     at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
      [run]     ... 31 more

If you edit your kepler-2.3/module-info/modules.txt to refer to ptolemy instead
of ptolemy-kepler-2.3 (either rename your ptolemy-kepler-2.3 to ptolemy, or
just use your existing 'trunk' ptolemy dir), and restart kepler-2.3, Automate
Layout works fine.

I compared the classpaths between the two ways of launching kepler described
above, and when using "ptolemy-kepler-2.3", the classpath is lacking a bunch of
jars, including the kieler.jar:

/Users/derik/dev2/kepler.modules/ptolemy/src/lib/PDFRenderer.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/aopalliance-license.htm:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/aopalliance.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/bsh-2.0b4.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/chic.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/diva.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/guice-3.0.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/guice-license.htm:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/jasminclasses.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/java_cup.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/javax.inject-license.htm:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/javax.inject.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/jna.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/junit-4.8.2.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/junit-license.htm:/Users/derik/dev2/ke
 pler.modules/ptolemy/src/lib/jython.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/kieler.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/libptmatlab.jnilib:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/libptmatlab.so:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/mapss.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/matlab.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/matlabLinux.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/matlabMacOSX.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/matlabSunOS.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/matlabWindows.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/naomi.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/ojdcheck-license.htm:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/ojdcheck.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/polyglotclasses-1.3.2.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/ptCal.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/p
 tII.properties.in:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/ptcolt.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/ptjacl.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/rxtxMacOSX.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/rxtxWindows.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/saxon8-dom.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/saxon8.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/sootclasses.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/swing-worker-1.2.jar:/Users/derik/dev2/kepler.modules/ptolemy/src/lib/swing-worker-license.htm

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