[kepler-dev] [Bug 5192] New: Module Manager reacts badly to dot files in resources/configuration directory

[bugzilla-daemon at ecoinformatics.org]

http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5192

           Summary: Module Manager reacts badly to dot files in
                    resources/configuration directory
           Product: Kepler
           Version: 2.0.0
          Platform: All
        OS/Version: All
            Status: NEW
          Severity: minor
          Priority: P2
         Component: build system
        AssignedTo: berkley at nceas.ucsb.edu
        ReportedBy: cxh at eecs.berkeley.edu
         QAContact: kepler-dev at kepler-project.org
   Estimated Hours: 0.0


I was trying to follow the 2.1 instructions at
https://kepler-project.org/developers/teams/build/kepler-2.1-release-roadmap/?searchterm=roadmap 

and edited 
kepler-2.1/module-manager-2.1/resources/configurations/configuration.xml
with Emacs, which created
kepler-2.1/module-manager-2.1/resources/configurations/.#configuration.xml

Then ant clean-all run
failed:

run:
      [run] setting dock icon to
-Xdock:icon=/Users/cxh/src/kepler-2.1/common-2.1/resources/icons/kepler-dock-icon.png
      [run] Set environment variable: PATH =
/Users/cxh/bin:/Users/cxh/ptII/bin:/usr/local/apache-maven/bin:/Users/cxh/bin:/Users/cxh/ptII/bin:/usr/local/apache-maven/bin:/Users/cxh/ptII/vendors/misc/dbxml-2.5.16/install/bin:/Users/cxh/bin:/Users/cxh/ptII/bin:/usr/local/apache-maven/bin:/opt/subversion/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/texbin:/usr/local/texlive/2007/bin:/usr/local/git/bin:/Users/cxh/ptII/vendors/misc/dbxml-2.5.16/install/bin:/Users/cxh/ptII/vendors/misc/dbxml-2.5.16/install/bin:/Users/cxh/bin:/Users/cxh/ptII/bin:/usr/local/apache-maven/bin:/opt/subversion/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/texbin:/usr/local/texlive/2007/bin:/usr/texbin:/usr/local/texlive/2007/bin:/Users/cxh/ptII/vendors/misc/dbxml-2.5.16/install/bin:/Users/cxh/src/kepler-2.1/r-2.1/lib:/Users/cxh/src/kepler-2.1/common-2.1/lib/ptolemy/matlab:/Users/cxh/src/kepler-2.1/common-2.1/lib
      [run] Set environment variable: R_HOME =
/Library/Frameworks/R.framework/Resources
      [run] /Users/cxh/src/kepler-2.1
      [run] java.io.FileNotFoundException:
/Users/cxh/src/kepler-2.1/module-manager-2.1/resources/configurations/.#configuration.xml
(No such file or directory)
      [run]     at java.io.FileInputStream.open(Native Method)
      [run]     at java.io.FileInputStream.<init>(FileInputStream.java:106)
      [run]     at
org.kepler.configuration.CommonsConfigurationReader.loadConfiguration(CommonsConfigurationReader.java:144)
      [run]     at
org.kepler.configuration.CommonsConfigurationReader.loadConfigurations(CommonsConfigurationReader.java:92)
      [run]     at
org.kepler.configuration.CommonsConfigurationReader.loadConfigurations(CommonsConfigurationReader.java:64)
      [run]     at
org.kepler.configuration.ConfigurationManager.loadConfiguration(ConfigurationManager.java:420)
      [run]     at
org.kepler.configuration.ConfigurationManager.<init>(ConfigurationManager.java:87)
      [run]     at
org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:116)
      [run]     at
org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:105)
      [run]     at
org.kepler.modulemanager.RepositoryLocations.initReleaseLocation(RepositoryLocations.java:24)
      [run]     at
org.kepler.modulemanager.RepositoryLocations.getReleaseLocation(RepositoryLocations.java:18)
      [run]     at org.kepler.Kepler.main(Kepler.java:89)
      [run] org.kepler.configuration.ConfigurationManagerException: Error
loading configuration file:
/Users/cxh/src/kepler-2.1/module-manager-2.1/resources/configurations/.#configuration.xml
(No such file or directory)
      [run]     at
org.kepler.configuration.CommonsConfigurationReader.loadConfiguration(CommonsConfigurationReader.java:171)
      [run]     at
org.kepler.configuration.CommonsConfigurationReader.loadConfigurations(CommonsConfigurationReader.java:92)
      [run]     at
org.kepler.configuration.CommonsConfigurationReader.loadConfigurations(CommonsConfigurationReader.java:64)
      [run]     at
org.kepler.configuration.ConfigurationManager.loadConfiguration(ConfigurationManager.java:420)
      [run]     at
org.kepler.configuration.ConfigurationManager.<init>(ConfigurationManager.java:87)
      [run]     at
org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:116)
      [run]     at
org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:105)
      [run]     at
org.kepler.modulemanager.RepositoryLocations.initReleaseLocation(RepositoryLocations.java:24)
      [run]     at
org.kepler.modulemanager.RepositoryLocations.getReleaseLocation(RepositoryLocations.java:18)
      [run]     at org.kepler.Kepler.main(Kepler.java:89)
      [run] org.kepler.configuration.ConfigurationManagerException: Error
loading configuration: Error loading configuration file:
/Users/cxh/src/kepler-2.1/module-manager-2.1/resources/configurations/.#configuration.xml
(No such file or directory)
      [run]     at
org.kepler.configuration.CommonsConfigurationReader.loadConfigurations(CommonsConfigurationReader.java:105)
      [run]     at
org.kepler.configuration.CommonsConfigurationReader.loadConfigurations(CommonsConfigurationReader.java:64)
      [run]     at
org.kepler.configuration.ConfigurationManager.loadConfiguration(ConfigurationManager.java:420)
      [run]     at
org.kepler.configuration.ConfigurationManager.<init>(ConfigurationManager.java:87)
      [run]     at
org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:116)
      [run]     at
org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:105)
      [run]     at
org.kepler.modulemanager.RepositoryLocations.initReleaseLocation(RepositoryLocations.java:24)
      [run]     at
org.kepler.modulemanager.RepositoryLocations.getReleaseLocation(RepositoryLocations.java:18)
      [run]     at org.kepler.Kepler.main(Kepler.java:89)
      [run] Exception in thread "main" java.lang.RuntimeException: Could not
load configuration: Error loading configuration: Error loading configuration
file:
/Users/cxh/src/kepler-2.1/module-manager-2.1/resources/configurations/.#configuration.xml
(No such file or directory)
      [run]     at
org.kepler.configuration.ConfigurationManager.<init>(ConfigurationManager.java:93)
      [run]     at
org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:116)
      [run]     at
org.kepler.configuration.ConfigurationManager.getInstance(ConfigurationManager.java:105)
      [run]     at
org.kepler.modulemanager.RepositoryLocations.initReleaseLocation(RepositoryLocations.java:24)
      [run]     at
org.kepler.modulemanager.RepositoryLocations.getReleaseLocation(RepositoryLocations.java:18)
      [run]     at org.kepler.Kepler.main(Kepler.java:89)

BUILD FAILED
/Users/cxh/src/kepler-2.1/build-area/build.xml:36: Java returned: 1

Total time: 2 minutes 52 seconds
bash-3.2$ ls ~/src/kepler-2.1/module-manager-2.1/resources/configurations/
configuration.xml
bash-3.2$ ls -a ~/src/kepler-2.1/module-manager-2.1/resources/configurations/
.            ..            configuration.xml
.#configuration.xml    .svn
bash-3.2$

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