[kepler-dev] [Bug 5184] sanity check(s) when attempting to open owl file

[bugzilla-daemon at ecoinformatics.org]

http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5184

--- Comment #1 from Derik Barseghian <barseghian at nceas.ucsb.edu> 2010-09-16 16:39:12 PDT ---
As requested, stack trace:

 [run] Ran additional initialization for module reporting from class
org.kepler.module.reporting.Initialize
      [run] Kepler Initializing...
      [run] getAllRspnsElement  is null
      [run] org.semanticweb.owl.io.OWLOntologyCreationIOException:
/Users/derik/dev2/kepler.modules.2.1/common-2.1/configs/ptolemy/configs/kepler/ontologies/Users/derik/KeplerData/modules/core/onto7934053400911427464.owl
(No such file or directory)
      [run]     at
uk.ac.manchester.cs.owl.ParsableOWLOntologyFactory.loadOWLOntology(ParsableOWLOntologyFactory.java:166)
      [run]     at
uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:380)
      [run]     at
uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntologyFromPhysicalURI(OWLOntologyManagerImpl.java:349)
      [run]     at
org.kepler.sms.NamedOntModel.initialize(NamedOntModel.java:190)
      [run]     at
org.kepler.sms.OntologyCatalog.initialize(OntologyCatalog.java:475)
      [run]     at
org.kepler.sms.OntologyCatalog.initialize(OntologyCatalog.java:450)
      [run]     at
org.kepler.sms.OntologyCatalog.<init>(OntologyCatalog.java:101)
      [run]     at
org.kepler.sms.OntologyCatalog.instance(OntologyCatalog.java:119)
      [run]     at
org.kepler.objectmanager.library.LibIndex.assureOntologyComponent(LibIndex.java:627)
      [run]     at
org.kepler.objectmanager.library.LibIndex.rebuild(LibIndex.java:261)
      [run]     at
org.kepler.objectmanager.library.LibraryManager.buildLibrary(LibraryManager.java:343)
      [run]     at
org.kepler.moml.KARLibraryBuilder.buildLibrary(KARLibraryBuilder.java:78)
      [run]     at
ptolemy.actor.gui.UserActorLibrary.openLibrary(UserActorLibrary.java:202)
      [run]     at
ptolemy.actor.gui.UserActorLibrary.openUserLibrary(UserActorLibrary.java:140)
      [run]     at
ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:330)
      [run]     at
ptolemy.vergil.VergilApplication._createEmptyConfiguration(VergilApplication.java:347)
      [run]     at
ptolemy.actor.gui.ConfigurationApplication._parseArgs(ConfigurationApplication.java:1128)
      [run]     at
ptolemy.vergil.VergilApplication._parseArgs(VergilApplication.java:477)
      [run]     at
ptolemy.actor.gui.ConfigurationApplication.<init>(ConfigurationApplication.java:226)
      [run]     at
ptolemy.actor.gui.MoMLApplication.<init>(MoMLApplication.java:81)
      [run]     at
ptolemy.vergil.VergilApplication.<init>(VergilApplication.java:110)
      [run]     at
ptolemy.vergil.VergilApplication$1.run(VergilApplication.java:219)
      [run]     at
java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
      [run]     at java.awt.EventQueue.dispatchEvent(EventQueue.java:461)
      [run]     at
java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:269)
      [run]     at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190)
      [run]     at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:184)
      [run]     at
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:176)
      [run]     at
java.awt.EventDispatchThread.run(EventDispatchThread.java:110)
      [run] Caused by: java.io.FileNotFoundException:
/Users/derik/dev2/kepler.modules.2.1/common-2.1/configs/ptolemy/configs/kepler/ontologies/Users/derik/KeplerData/modules/core/onto7934053400911427464.owl
(No such file or directory)
      [run]     at java.io.FileInputStream.open(Native Method)
      [run]     at java.io.FileInputStream.<init>(FileInputStream.java:106)
      [run]     at java.io.FileInputStream.<init>(FileInputStream.java:66)
      [run]     at
sun.net.www.protocol.file.FileURLConnection.connect(FileURLConnection.java:70)
      [run]     at
sun.net.www.protocol.file.FileURLConnection.getInputStream(FileURLConnection.java:161)
      [run]     at
org.semanticweb.owl.io.AbstractOWLParser.getInputStream(AbstractOWLParser.java:105)
      [run]     at
org.semanticweb.owl.io.AbstractOWLParser.getInputSource(AbstractOWLParser.java:128)
      [run]     at
org.coode.owl.rdfxml.parser.RDFXMLParser.parse(RDFXMLParser.java:85)
      [run]     at
uk.ac.manchester.cs.owl.ParsableOWLOntologyFactory.loadOWLOntology(ParsableOWLOntologyFactory.java:154)
      [run]     ... 28 more

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