[kepler-dev] [Bug 4996] 2.0-RC2 demos don't work

bugzilla-daemon at ecoinformatics.org bugzilla-daemon at ecoinformatics.org
Sun May 9 22:18:13 PDT 2010 

http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4996

--- Comment #1 from Christopher Brooks <cxh at eecs.berkeley.edu> 2010-05-09 22:18:12 PDT ---
It looks like a version change from 2.0 to 2.0.0 is causing problems.
I removed my KeplerData directory and installed Kepler-2.0-RC2, which created

bash-3.2$ ls ~/KeplerData/
Kepler-2.0.0-Demos    modules            workflows


A bunch of demos fail because 2.0 vs 2.0.0.  This is similar to
bug #4994.  What we ship in Kepler-2.0-RCn should have the same version
numbers as is in the kepler-2.0 svn branch.  In Kepler-2.0-RC2, the
modules have a version number of 2.0.0:

bash-3.2$ ls /Applications/Kepler-2.0-RC2/Kepler.app/Kepler/
actors-2.0.0            demos                module-manager-2.0.1
apple-extensions-2.0.0        directors-2.0.0           
module-manager-gui-2.0.0
authentication-2.0.0        ecogrid-2.0.0            opendap-2.0.0
authentication-gui-2.0.0    event-state-2.0.0        outreach-2.0.0
build-area            gui-2.0.0            ptolemy-8.0.0
common-2.0.0            io-2.0.0            r-2.0.0
component-library-2.0.0        job-2.0.0            repository-2.0.0
configuration-manager-2.0.0    kepler-2.0.0            sms-2.0.0
core-2.0.0            kepler-tasks-2.0.0        ssh-2.0.0
data                kepler.jar            util-2.0.0
data-handling-2.0.0        kepler.sh
dataturbine-2.0.0        loader-2.0.0


In the Kepler-2.0 branch, the modules have a 2.0 version number:

bash-3.2$ ls ~/src/kepler-2.0
Kepler.app            directors-2.0            loader-2.0
actors-2.0            ecogrid-2.0            module-manager-2.0
apple-extensions-2.0        event-state-2.0            module-manager-gui-2.0
authentication-2.0        gui-2.0                opendap-2.0
authentication-gui-2.0        io-2.0                outreach-2.0
build-area            job-2.0                ptolemy-8.0
common-2.0            kepler-2.0            r-2.0
component-library-2.0        kepler-tasks-2.0        repository-2.0
configuration-manager-2.0    kepler.bat            sms-2.0
core-2.0            kepler.exe            ssh-2.0
data-handling-2.0        kepler.jar            util-2.0
dataturbine-2.0            kepler.sh


ENM/GARP_MultipleSpecies-V.xml fails:

ptolemy.kernel.util.IllegalActionException: Cannot open file or URL
  in .GARP_MultipleSpecies-V.Get Species/Location information.Line
Reader.fileOrURL
Because:
Cannot read file
'/Users/cxh/KeplerData/Kepler-2.0-Demos/data/garp/speciesList.txt' or
'/Users/cxh/KeplerData/Kepler-2.0-Demos/data/garp/speciesList.txt'
    at ptolemy.data.expr.FileParameter.openForReading(FileParameter.java:337)
    at
ptolemy.actor.lib.io.LineReader._openAndReadFirstLine(LineReader.java:325)
    at ptolemy.actor.lib.io.LineReader.preinitialize(LineReader.java:298)
    at ptolemy.actor.Director.preinitialize(Director.java:998)
    at ptolemy.actor.Director.preinitialize(Director.java:979)
    at
ptolemy.domains.sdf.kernel.SDFDirector.preinitialize(SDFDirector.java:640)
    at ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1416)
    at ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:983)
    at ptolemy.actor.Manager.initialize(Manager.java:643)
    at ptolemy.actor.Manager.execute(Manager.java:340)
    at ptolemy.actor.Manager.run(Manager.java:1162)
    at ptolemy.actor.Manager$3.run(Manager.java:1215)
Caused by: java.io.IOException: Cannot read file
'/Users/cxh/KeplerData/Kepler-2.0-Demos/data/garp/speciesList.txt' or
'/Users/cxh/KeplerData/Kepler-2.0-Demos/data/garp/speciesList.txt'
    at ptolemy.util.FileUtilities.nameToURL(FileUtilities.java:332)
    at ptolemy.util.FileUtilities.openForReading(FileUtilities.java:501)
    at ptolemy.data.expr.FileParameter.openForReading(FileParameter.java:333)
    ... 11 more
Caused by: java.io.IOException: Cannot read file
'/Users/cxh/KeplerData/Kepler-2.0-Demos/data/garp/speciesList.txt' or
'/Users/cxh/KeplerData/Kepler-2.0-Demos/data/garp/speciesList.txt'
    at ptolemy.util.FileUtilities.nameToURL(FileUtilities.java:332)
    at ptolemy.util.FileUtilities.openForReading(FileUtilities.java:501)
    at ptolemy.data.expr.FileParameter.openForReading(FileParameter.java:333)
    at
ptolemy.actor.lib.io.LineReader._openAndReadFirstLine(LineReader.java:325)
    at ptolemy.actor.lib.io.LineReader.preinitialize(LineReader.java:298)
    at ptolemy.actor.Director.preinitialize(Director.java:998)
    at ptolemy.actor.Director.preinitialize(Director.java:979)
    at
ptolemy.domains.sdf.kernel.SDFDirector.preinitialize(SDFDirector.java:640)
    at ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1416)
    at ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:983)
    at ptolemy.actor.Manager.initialize(Manager.java:643)
    at ptolemy.actor.Manager.execute(Manager.java:340)
    at ptolemy.actor.Manager.run(Manager.java:1162)
    at ptolemy.actor.Manager$3.run(Manager.java:1215)




ptolemy.kernel.util.IllegalActionException: Cannot open file or URL
  in .GARP_SingleSpecies_BestRuleSet-IV.Future_Climate_Models.Line
Reader.fileOrURL
Because:
Cannot read file
'/Users/cxh/KeplerData/Kepler-2.0-Demos/data/garp/climateList.txt' or
'/Users/cxh/KeplerData/Kepler-2.0-Demos/data/garp/climateList.txt'
    at ptolemy.data.expr.FileParameter.openForReading(FileParameter.java:337)
    at
ptolemy.actor.lib.io.LineReader._openAndReadFirstLine(LineReader.java:325)
    at ptolemy.actor.lib.io.LineReader.preinitialize(LineReader.java:298)
    at ptolemy.actor.Director.preinitialize(Director.java:998)
    at ptolemy.actor.Director.preinitialize(Director.java:979)
    at
ptolemy.domains.sdf.kernel.SDFDirector.preinitialize(SDFDirector.java:640)
    at ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1416)
    at ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:983)
    at ptolemy.actor.Manager.initialize(Manager.java:643)
    at ptolemy.actor.Manager.execute(Manager.java:340)
    at ptolemy.actor.Manager.run(Manager.java:1162)
    at ptolemy.actor.Manager$3.run(Manager.java:1215)
Caused by: java.io.IOException: Cannot read file
'/Users/cxh/KeplerData/Kepler-2.0-Demos/data/garp/climateList.txt' or
'/Users/cxh/KeplerData/Kepler-2.0-Demos/data/garp/climateList.txt'
    at ptolemy.util.FileUtilities.nameToURL(FileUtilities.java:332)
    at ptolemy.util.FileUtilities.openForReading(FileUtilities.java:501)
    at ptolemy.data.expr.FileParameter.openForReading(FileParameter.java:333)
    ... 11 more
Caused by: java.io.IOException: Cannot read file
'/Users/cxh/KeplerData/Kepler-2.0-Demos/data/garp/climateList.txt' or
'/Users/cxh/KeplerData/Kepler-2.0-Demos/data/garp/climateList.txt'
    at ptolemy.util.FileUtilities.nameToURL(FileUtilities.java:332)
    at ptolemy.util.FileUtilities.openForReading(FileUtilities.java:501)
    at ptolemy.data.expr.FileParameter.openForReading(FileParameter.java:333)
    at
ptolemy.actor.lib.io.LineReader._openAndReadFirstLine(LineReader.java:325)
    at ptolemy.actor.lib.io.LineReader.preinitialize(LineReader.java:298)
    at ptolemy.actor.Director.preinitialize(Director.java:998)
    at ptolemy.actor.Director.preinitialize(Director.java:979)
    at
ptolemy.domains.sdf.kernel.SDFDirector.preinitialize(SDFDirector.java:640)
    at ptolemy.actor.CompositeActor.preinitialize(CompositeActor.java:1416)
    at ptolemy.actor.Manager.preinitializeAndResolveTypes(Manager.java:983)
    at ptolemy.actor.Manager.initialize(Manager.java:643)
    at ptolemy.actor.Manager.execute(Manager.java:340)
    at ptolemy.actor.Manager.run(Manager.java:1162)
    at ptolemy.actor.Manager$3.run(Manager.java:1215)


ENM/GARP_SingleSpecies_BestRuleSet-IV.xml has a similar failure.



gettingStarted/03-ImageDisplay.xml fails:


ptolemy.kernel.util.IllegalActionException: Image file
/Users/cxh/KeplerData/Kepler-2.0-Demos/demos/getting-started/species-distribution.jpg
does not exist.
  in .03-ImageDisplay.Image Converter
Because:
Image file
/Users/cxh/KeplerData/Kepler-2.0-Demos/demos/getting-started/species-distribution.jpg
does not exist.
    at ptolemy.actor.AtomicActor.iterate(AtomicActor.java:508)
    at
ptolemy.actor.sched.StaticSchedulingDirector.fire(StaticSchedulingDirector.java:188)
    at ptolemy.actor.CompositeActor.fire(CompositeActor.java:458)
    at ptolemy.actor.Manager.iterate(Manager.java:749)
    at ptolemy.actor.Manager.execute(Manager.java:351)
    at ptolemy.actor.Manager.run(Manager.java:1162)
    at ptolemy.actor.Manager$3.run(Manager.java:1215)
Caused by: ptolemy.kernel.util.IllegalActionException: Image file
/Users/cxh/KeplerData/Kepler-2.0-Demos/demos/getting-started/species-distribution.jpg
does not exist.
    at util.ImageConverter.fire(ImageConverter.java:138)
    at ptolemy.actor.AtomicActor.iterate(AtomicActor.java:469)
    ... 6 more
Caused by: ptolemy.kernel.util.IllegalActionException: Image file
/Users/cxh/KeplerData/Kepler-2.0-Demos/demos/getting-started/species-distribution.jpg
does not exist.
    at util.ImageConverter.fire(ImageConverter.java:138)
    at ptolemy.actor.AtomicActor.iterate(AtomicActor.java:469)
    at
ptolemy.actor.sched.StaticSchedulingDirector.fire(StaticSchedulingDirector.java:188)
    at ptolemy.actor.CompositeActor.fire(CompositeActor.java:458)
    at ptolemy.actor.Manager.iterate(Manager.java:749)
    at ptolemy.actor.Manager.execute(Manager.java:351)
    at ptolemy.actor.Manager.run(Manager.java:1162)
    at ptolemy.actor.Manager$3.run(Manager.java:1215)


getting-started/07-CommandLine_1.xml fails:
ptolemy.kernel.util.IllegalActionException: No such directory:
/Users/cxh/KeplerData/Kepler-2.0-Demos/demos/getting-started
  in .07-CommandLine_1.External Execution
Because:
No such directory: /Users/cxh/KeplerData/Kepler-2.0-Demos/demos/getting-started
    at ptolemy.actor.AtomicActor.iterate(AtomicActor.java:508)
    at
ptolemy.actor.sched.StaticSchedulingDirector.fire(StaticSchedulingDirector.java:188)
    at ptolemy.actor.CompositeActor.fire(CompositeActor.java:458)
    at ptolemy.actor.Manager.iterate(Manager.java:749)
    at ptolemy.actor.Manager.execute(Manager.java:351)
    at ptolemy.actor.Manager.run(Manager.java:1162)
    at ptolemy.actor.Manager$3.run(Manager.java:1215)
Caused by: ptolemy.kernel.util.IllegalActionException: No such directory:
/Users/cxh/KeplerData/Kepler-2.0-Demos/demos/getting-started
    at ptolemy.actor.lib.Exec._exec(Exec.java:497)
    at ptolemy.actor.lib.Exec.fire(Exec.java:320)
    at ptolemy.actor.AtomicActor.iterate(AtomicActor.java:469)
    ... 6 more
Caused by: ptolemy.kernel.util.IllegalActionException: No such directory:
/Users/cxh/KeplerData/Kepler-2.0-Demos/demos/getting-started
    at ptolemy.actor.lib.Exec._exec(Exec.java:497)
    at ptolemy.actor.lib.Exec.fire(Exec.java:320)
    at ptolemy.actor.AtomicActor.iterate(AtomicActor.java:469)
    at
ptolemy.actor.sched.StaticSchedulingDirector.fire(StaticSchedulingDirector.java:188)
    at ptolemy.actor.CompositeActor.fire(CompositeActor.java:458)
    at ptolemy.actor.Manager.iterate(Manager.java:749)
    at ptolemy.actor.Manager.execute(Manager.java:351)
    at ptolemy.actor.Manager.run(Manager.java:1162)
    at ptolemy.actor.Manager$3.run(Manager.java:1215)



getting-started/08-CommandLine_2.xml fails:

ptolemy.kernel.util.IllegalActionException: No such directory:
/Users/cxh/KeplerData/Kepler-2.0-Demos/demos/getting-started
  in .08-CommandLine_2.External Execution
Because:
No such directory: /Users/cxh/KeplerData/Kepler-2.0-Demos/demos/getting-started
    at ptolemy.actor.AtomicActor.iterate(AtomicActor.java:508)
    at
ptolemy.actor.sched.StaticSchedulingDirector.fire(StaticSchedulingDirector.java:188)
    at ptolemy.actor.CompositeActor.fire(CompositeActor.java:458)
    at ptolemy.actor.Manager.iterate(Manager.java:749)
    at ptolemy.actor.Manager.execute(Manager.java:351)
    at ptolemy.actor.Manager.run(Manager.java:1162)
    at ptolemy.actor.Manager$3.run(Manager.java:1215)
Caused by: ptolemy.kernel.util.IllegalActionException: No such directory:
/Users/cxh/KeplerData/Kepler-2.0-Demos/demos/getting-started
    at ptolemy.actor.lib.Exec._exec(Exec.java:497)
    at ptolemy.actor.lib.Exec.fire(Exec.java:320)
    at ptolemy.actor.AtomicActor.iterate(AtomicActor.java:469)
    ... 6 more
Caused by: ptolemy.kernel.util.IllegalActionException: No such directory:
/Users/cxh/KeplerData/Kepler-2.0-Demos/demos/getting-started
    at ptolemy.actor.lib.Exec._exec(Exec.java:497)
    at ptolemy.actor.lib.Exec.fire(Exec.java:320)
    at ptolemy.actor.AtomicActor.iterate(AtomicActor.java:469)
    at
ptolemy.actor.sched.StaticSchedulingDirector.fire(StaticSchedulingDirector.java:188)
    at ptolemy.actor.CompositeActor.fire(CompositeActor.java:458)
    at ptolemy.actor.Manager.iterate(Manager.java:749)
    at ptolemy.actor.Manager.execute(Manager.java:351)
    at ptolemy.actor.Manager.run(Manager.java:1162)
    at ptolemy.actor.Manager$3.run(Manager.java:1215)

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