[kepler-dev] ontology with imported ontologies bug

[Chris Weed]

Kepler 2.0 does not seem to correctly deal with ontologies that import
concepts from other ontologies.

I was looking through my changes to NamedOntModel from Kepler 1.X Dev,
and it looks like I added a method called
getNameSpaces() that returns a list of the namespaces from all ontologies

public List<String> getNameSpaces() {
		List<String> result = new ArrayList<String>();
		for(Iterator<Ontology> iter = _ontModel.listOntologies();iter.hasNext();)
		{
			result.add(iter.next().getNameSpace());
		}
		return result;
	}

Then I changed OntologyCatalog's methods getNamedOntClass:


	public NamedOntClass getNamedOntClass(SemanticType st) {
		String conceptId = st.getConceptId();
		String[] parts = conceptId.split("#");
		// make sure we have a valid semantic type
		if (parts.length != 2) {
			return null;
		}
		// search for a matching model and class
		for (Iterator iter = getNamedOntModels(); iter.hasNext();) {
			NamedOntModel m = (NamedOntModel) iter.next();
			//if (m.getNameSpace().equals(parts[0])) {
			//if (m.getNameSpaces().contains(parts[0])) {
			if (startsWith(m.getNameSpaces(),parts[0])) {
				for (Iterator iter2 = m.getNamedClasses(false); iter2.hasNext();) {
					NamedOntClass c = (NamedOntClass) iter2.next();
					if (c.getLocalName().equals(parts[1])) {
						return c;
					}
				}
			}
		}
		return null;
	}
	
	boolean startsWith(List<String> l,String s)
	{
		for(Iterator<String> iter = l.iterator();iter.hasNext();)
			if(s.startsWith(iter.next()))
				return true;
		return false;
	}

	
	public NamedOntClass getNamedOntClass(String namespace, String localName) {
		if (namespace == null || localName == null) {
			return null;
		}
		// search for a matching model and class
		for (Iterator iter = getNamedOntModels(); iter.hasNext();) {
			NamedOntModel m = (NamedOntModel) iter.next();
			String m_nspace = m.getNameSpace() + "#";
			//if (m.getNameSpace().equals(namespace)
			//		|| m_nspace.equals(namespace)) {
			if (m.getNameSpaces().contains(namespace)
					|| m_nspace.equals(namespace)) {
				for (Iterator<NamedOntClass> iter2 = m.getNamedClasses(false); iter2
						.hasNext();) {
					NamedOntClass c = (NamedOntClass) iter2.next();
					if (c.getLocalName().equals(localName)) {
						return c;
					}
				}
			}
		}
		return null;
	}

I am not sure if this is a solution you want to use.

FYI
Chris