[kepler-dev] [Bug 4462] Component search in remote repositories not working
bugzilla-daemon at ecoinformatics.org
bugzilla-daemon at ecoinformatics.org
Fri Jan 29 11:25:00 PST 2010
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4462
--- Comment #3 from Sean Riddle <swriddle at gmail.com> 2010-01-29 11:24:59 PST ---
Trying to search the kepler dev repository yielded the following errors:
[run] trying to clone tpc02-water-flow-base but you can't clone this
object for some reason: Problem cloning 'output'
[run] ERROR
(org.ecoinformatics.seek.datasource.EcogridDataCacheItem:getDataItemFromEcoGrid:326)
EcogridDataCacheItem - error connecting to Ecogrid
[run] AxisFault
[run] faultCode:
{http://schemas.xmlsoap.org/soap/envelope/}Server.userException
[run] faultSubcode:
[run] faultString: java.rmi.RemoteException: Error reading document:
judithk.628
[run] faultActor:
[run] faultNode:
[run] faultDetail:
[run] {http://xml.apache.org/axis/}hostname:127.0.0.1
[run]
[run] java.rmi.RemoteException: Error reading document: judithk.628
[run] at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:222)
[run] at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:129)
[run] at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:1087)
[run] at
org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source)
[run] at
org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source)
[run] at
org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown
Source)
[run] at
org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown
Source)
[run] at org.apache.xerces.parsers.XML11Configuration.parse(Unknown
Source)
[run] at org.apache.xerces.parsers.XML11Configuration.parse(Unknown
Source)
[run] at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
[run] at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown
Source)
[run] at javax.xml.parsers.SAXParser.parse(SAXParser.java:375)
[run] at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:227)
[run] at
org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
[run] at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
[run] at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:62)
[run] at
org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
[run] at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
[run] at org.apache.axis.client.Call.invoke(Call.java:2767)
[run] at org.apache.axis.client.Call.invoke(Call.java:2443)
[run] at org.apache.axis.client.Call.invoke(Call.java:2366)
[run] at org.apache.axis.client.Call.invoke(Call.java:1812)
[run] at
org.ecoinformatics.ecogrid.queryservice.stub.QueryServiceStub.get(Unknown
Source)
[run] at
org.ecoinformatics.ecogrid.queryservice.QueryServiceGetToStreamClient.get(Unknown
Source)
[run] at
org.ecoinformatics.seek.datasource.EcogridDataCacheItem.getDataItemFromEcoGrid(EcogridDataCacheItem.java:316)
[run] at
org.ecoinformatics.seek.datasource.EcogridDataCacheItem.getContentFromSource(EcogridDataCacheItem.java:159)
[run] at
org.ecoinformatics.seek.datasource.EcogridDataCacheItem.downloadDataFromSource(EcogridDataCacheItem.java:94)
[run] at
org.ecoinformatics.seek.datasource.EcogridDataCacheItem.doWork(EcogridDataCacheItem.java:85)
[run] at
org.kepler.objectmanager.cache.DataCacheObject.run(DataCacheObject.java:422)
[run] at java.lang.Thread.run(Thread.java:613)
[run] ERROR
(org.ecoinformatics.seek.datasource.EcogridDataCacheItem:getDataItemFromEcoGrid:326)
EcogridDataCacheItem - error connecting to Ecogrid
[run] AxisFault
[run] faultCode:
{http://schemas.xmlsoap.org/soap/envelope/}Server.userException
[run] faultSubcode:
[run] faultString: java.rmi.RemoteException:
/var/metacat/data/judithk.894.1 (Too many open files)
[run] faultActor:
[run] faultNode:
[run] faultDetail:
[run] {http://xml.apache.org/axis/}hostname:127.0.0.1
[run]
[run] java.rmi.RemoteException: /var/metacat/data/judithk.894.1 (Too many
open files)
[run] at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:222)
[run] at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:129)
[run] at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:1087)
[run] at
org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source)
[run] at
org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source)
[run] at
org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown
Source)
[run] at
org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown
Source)
[run] at org.apache.xerces.parsers.XML11Configuration.parse(Unknown
Source)
[run] at org.apache.xerces.parsers.XML11Configuration.parse(Unknown
Source)
[run] at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
[run] at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown
Source)
[run] at javax.xml.parsers.SAXParser.parse(SAXParser.java:375)
[run] at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:227)
[run] at
org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
[run] at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
[run] at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:62)
[run] at
org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
[run] at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
[run] at org.apache.axis.client.Call.invoke(Call.java:2767)
[run] at org.apache.axis.client.Call.invoke(Call.java:2443)
[run] at org.apache.axis.client.Call.invoke(Call.java:2366)
[run] at org.apache.axis.client.Call.invoke(Call.java:1812)
[run] at
org.ecoinformatics.ecogrid.queryservice.stub.QueryServiceStub.get(Unknown
Source)
[run] at
org.ecoinformatics.ecogrid.queryservice.QueryServiceGetToStreamClient.get(Unknown
Source)
[run] at
org.ecoinformatics.seek.datasource.EcogridDataCacheItem.getDataItemFromEcoGrid(EcogridDataCacheItem.java:316)
[run] at
org.ecoinformatics.seek.datasource.EcogridDataCacheItem.getContentFromSource(EcogridDataCacheItem.java:159)
[run] at
org.ecoinformatics.seek.datasource.EcogridDataCacheItem.downloadDataFromSource(EcogridDataCacheItem.java:94)
[run] at
org.ecoinformatics.seek.datasource.EcogridDataCacheItem.doWork(EcogridDataCacheItem.java:85)
[run] at
org.kepler.objectmanager.cache.DataCacheObject.run(DataCacheObject.java:422)
[run] at java.lang.Thread.run(Thread.java:613)
[run] ERROR
(org.ecoinformatics.seek.datasource.EcogridDataCacheItem:getDataItemFromEcoGrid:326)
EcogridDataCacheItem - error connecting to Ecogrid
[run] AxisFault
[run] faultCode:
{http://schemas.xmlsoap.org/soap/envelope/}Server.userException
[run] faultSubcode:
[run] faultString: java.rmi.RemoteException:
/var/metacat/data/judithk.630.1 (Too many open files)
[run] faultActor:
[run] faultNode:
[run] faultDetail:
[run] {http://xml.apache.org/axis/}hostname:127.0.0.1
[run]
[run] java.rmi.RemoteException: /var/metacat/data/judithk.630.1 (Too many
open files)
[run] at
org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:222)
[run] at
org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:129)
[run] at
org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:1087)
[run] at
org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source)
[run] at
org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source)
[run] at
org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown
Source)
[run] at
org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown
Source)
[run] at org.apache.xerces.parsers.XML11Configuration.parse(Unknown
Source)
[run] at org.apache.xerces.parsers.XML11Configuration.parse(Unknown
Source)
[run] at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
[run] at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown
Source)
[run] at javax.xml.parsers.SAXParser.parse(SAXParser.java:375)
[run] at
org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:227)
[run] at
org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
[run] at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
[run] at
org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:62)
[run] at
org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
[run] at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
[run] at org.apache.axis.client.Call.invoke(Call.java:2767)
[run] at org.apache.axis.client.Call.invoke(Call.java:2443)
[run] at org.apache.axis.client.Call.invoke(Call.java:2366)
[run] at org.apache.axis.client.Call.invoke(Call.java:1812)
[run] at
org.ecoinformatics.ecogrid.queryservice.stub.QueryServiceStub.get(Unknown
Source)
[run] at
org.ecoinformatics.ecogrid.queryservice.QueryServiceGetToStreamClient.get(Unknown
Source)
[run] at
org.ecoinformatics.seek.datasource.EcogridDataCacheItem.getDataItemFromEcoGrid(EcogridDataCacheItem.java:316)
[run] at
org.ecoinformatics.seek.datasource.EcogridDataCacheItem.getContentFromSource(EcogridDataCacheItem.java:159)
[run] at
org.ecoinformatics.seek.datasource.EcogridDataCacheItem.downloadDataFromSource(EcogridDataCacheItem.java:94)
[run] at
org.ecoinformatics.seek.datasource.EcogridDataCacheItem.doWork(EcogridDataCacheItem.java:85)
[run] at
org.kepler.objectmanager.cache.DataCacheObject.run(DataCacheObject.java:422)
[run] at java.lang.Thread.run(Thread.java:613)
[remainder clipped]
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