[kepler-dev] Can not open GUI with fresh Kepler check up .
Aaron Schultz
aschultz at nceas.ucsb.edu
Fri Sep 18 09:53:19 PDT 2009
Another good example of why we should not be sharing a .kepler directory
amongst Kepler instances...
Jianwu Wang wrote:
> A new fresh check out and update of existing one on my Mac machine
> still have the same problem. But they finally work when I restart the
> machine. I think it may because some of my running processes also use
> kepler cache.
>
> Jianwu Wang wrote:
>> Hi Derik and Aaron,
>>
>> Thanks for your info. New update on my window machine works now.
>> Haven't check it on my Mac machine.
>>
>> Best wishes
>>
>> Sincerely yours
>>
>> Jianwu Wang
>> jianwu at sdsc.edu
>> http://users.sdsc.edu/~jianwu/
>>
>> Scientific Workflow Automation Technologies (SWAT) Laboratory
>> San Diego Supercomputer Center University of California, San Diego
>> San Diego, CA, U.S.A.
>>
>>
>> Aaron Schultz wrote:
>>>
>>> Seems to be better now.
>>>
>>> Aaron Schultz wrote:
>>>>
>>>> My fault, almost fixed...
>>>>
>>>>
>>>> Derik Barseghian wrote:
>>>>> Hi Jianwu,
>>>>>
>>>>> I just did a fresh checkout on linux (r20717) and the gui comes up
>>>>> for me.
>>>>>
>>>>> However I get a lot of warnings and then a number of errors to do
>>>>> with kar files, like:
>>>>>
>>>>> [run] WARN (org.kepler.kar.KARFile:populateCacheObjects:347)
>>>>> null KAREntry was not
>>>>> recognized: PolygonDiagramsTransition.xml
>>>>> [run] WARN
>>>>> (org.kepler.kar.KARCacheManager:synchronizeKARCacheWithLocalRepositories:153)
>>>>> Unable to
>>>>> process kar file
>>>>> "/home/barseghian/dev3/new.kepler/actors/kar/actors-AddPointToSVG.kar".
>>>>>
>>>>> [run] org.kepler.objectmanager.cache.CacheException: Error
>>>>> creating KARCacheObject: null
>>>>> [run] at
>>>>> org.kepler.kar.KARFile.populateCacheObjects(KARFile.java:364)
>>>>> [run] at
>>>>> org.kepler.kar.KARCacheManager.synchronizeKARCacheWithLocalRepositories(KARCacheManager.java:148)
>>>>>
>>>>> [run] at
>>>>> org.kepler.objectmanager.library.LibraryManager.buildLibrary(LibraryManager.java:904)
>>>>>
>>>>> [run] at
>>>>> org.kepler.objectmanager.library.LibraryManager.initialize(LibraryManager.java:1244)
>>>>>
>>>>>
>>>>>
>>>>> Derik
>>>>>
>>>>>
>>>>> On Sep 17, 2009, at 3:25 PM, Jianwu Wang wrote:
>>>>>
>>>>>> Hi guys,
>>>>>>
>>>>>> I just did a fresh check-out with version 20717 and use 'ant
>>>>>> clean-cache run'. But I can not open the gui. Does anyone know
>>>>>> why? Thanks
>>>>>>
>>>>>> kepler:build-area jianwu$ ant clean-cache run
>>>>>> Buildfile: build.xml
>>>>>> Trying to override old definition of task patch
>>>>>>
>>>>>> clean-kar:
>>>>>> [clean-kar] Deleting directory
>>>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/r/kar
>>>>>>
>>>>>> [clean-kar] Deleting directory
>>>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/actors/kar
>>>>>>
>>>>>> [clean-kar] Deleting directory
>>>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/directors/kar
>>>>>>
>>>>>>
>>>>>> clean-cache:
>>>>>> [delete] Deleting directory /Users/jianwu/.kepler
>>>>>>
>>>>>> compile:
>>>>>> [compile] Compiling module-manager...
>>>>>> [compile] Getting Ptolemy paths from
>>>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy/.classpath.default
>>>>>>
>>>>>> [compile] Compiling core...
>>>>>> [compile] Compiling event-state...
>>>>>> [compile] Compiling util...
>>>>>> [compile] Compiling component-library...
>>>>>> [compile] Compiling sms...
>>>>>> [compile] Compiling data-handling...
>>>>>> [compile] Compiling ssh...
>>>>>> [compile] Compiling io...
>>>>>> [compile] Compiling job...
>>>>>> [compile] Compiling repository...
>>>>>> [compile] Compiling authentication...
>>>>>> [compile] Compiling gui...
>>>>>> [compile] Compiling authentication-gui...
>>>>>> [compile] Compiling ecogrid...
>>>>>> [compile] Compiling opendap...
>>>>>> [compile] Compiling actors...
>>>>>> [compile] Compiling loader...
>>>>>> [compile] Compiling r...
>>>>>> [compile] Compiling apple-extensions...
>>>>>>
>>>>>> run:
>>>>>> [run] Getting Ptolemy paths from
>>>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy/.classpath.default
>>>>>>
>>>>>> [run] Set environment variable: PATH =
>>>>>> /sw/bin:/sw/sbin:/opt/subversion/bin:/Applications/MATLAB_R2008b.app/bin:/Users/jianwu/Projects/hadoop/hadoop-0.20.0/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/usr/X11R6/bin:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/kepler/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/apple-extensions/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/r/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/loader/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/actors/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/directors/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/opendap/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ecogrid/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/authentication-gui/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/gui/lib:/Users/jianw
>>>>>>
>> u
>>>>>>
>>> /Kepler/repository/kepler/kepler-trunk-0909/modules/authentication/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/repository/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/job/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/io/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ssh/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/data-handling/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/sms/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/component-library/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/util/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/event-state/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/core/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/common/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptII/l
>>>
>> i
>>>
>>> b:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/mo
>>> d
>>>>>>
>>>> ule
>>>>>>
>>>>>> -manager/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy/lib:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/ptolemy-lib/lib
>>>>>>
>>>>>> [run] Set environment variable: R_HOME =
>>>>>> /Library/Frameworks/R.framework/Resources
>>>>>> [run]
>>>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules
>>>>>> [run] Found OS Extension file:
>>>>>> /Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/apple-extensions/module-info/osextension.txt
>>>>>>
>>>>>> [run] loading OS extensions for OS Mac OS X with class
>>>>>> org.kepler.osx.KeplerOSXExtension
>>>>>> [run] Building Kars...
>>>>>> [run] Command failed
>>>>>> [run] Arguments: -kepler
>>>>>> [run]
>>>>>> [run] java.lang.Exception: Failed to parse "-kepler"
>>>>>> [run] at
>>>>>> ptolemy.actor.gui.ConfigurationApplication.throwArgsException(ConfigurationApplication.java:635)
>>>>>>
>>>>>> [run] at
>>>>>> ptolemy.actor.gui.ConfigurationApplication.<init>(ConfigurationApplication.java:292)
>>>>>>
>>>>>> [run] at
>>>>>> ptolemy.actor.gui.MoMLApplication.<init>(MoMLApplication.java:81)
>>>>>> [run] at
>>>>>> ptolemy.vergil.VergilApplication.<init>(VergilApplication.java:104)
>>>>>> [run] at
>>>>>> ptolemy.vergil.VergilApplication$1.run(VergilApplication.java:194)
>>>>>> [run] at
>>>>>> java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
>>>>>> [run] at
>>>>>> java.awt.EventQueue.dispatchEvent(EventQueue.java:633)
>>>>>> [run] at
>>>>>> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
>>>>>>
>>>>>> [run] at
>>>>>> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
>>>>>>
>>>>>> [run] at
>>>>>> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
>>>>>>
>>>>>> [run] at
>>>>>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
>>>>>>
>>>>>> [run] at
>>>>>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
>>>>>>
>>>>>> [run] at
>>>>>> java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
>>>>>> [run] Caused by: java.lang.Exception: Failed to read
>>>>>> configuration
>>>>>> 'file:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/common/configs/ptolemy/configs/kepler/configuration.xml'
>>>>>>
>>>>>> [run] at
>>>>>> ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:286)
>>>>>>
>>>>>> [run] at
>>>>>> ptolemy.vergil.VergilApplication._createEmptyConfiguration(VergilApplication.java:322)
>>>>>>
>>>>>> [run] at
>>>>>> ptolemy.actor.gui.ConfigurationApplication._parseArgs(ConfigurationApplication.java:1109)
>>>>>>
>>>>>> [run] at
>>>>>> ptolemy.vergil.VergilApplication._parseArgs(VergilApplication.java:452)
>>>>>>
>>>>>> [run] at
>>>>>> ptolemy.actor.gui.ConfigurationApplication.<init>(ConfigurationApplication.java:226)
>>>>>>
>>>>>> [run] ... 11 more
>>>>>> [run] Caused by: java.lang.Exception: Failed to call
>>>>>> application initializer class
>>>>>> "org.kepler.gui.KeplerInitializer". Perhaps the configuration
>>>>>> file
>>>>>> "file:/Users/jianwu/Kepler/repository/kepler/kepler-trunk-0909/modules/common/configs/ptolemy/configs/kepler/configuration.xml"
>>>>>> has a problem?
>>>>>> [run] at
>>>>>> ptolemy.actor.gui.ConfigurationApplication.readConfiguration(ConfigurationApplication.java:448)
>>>>>>
>>>>>> [run] at
>>>>>> ptolemy.vergil.VergilApplication._createDefaultConfiguration(VergilApplication.java:284)
>>>>>>
>>>>>> [run] ... 15 more
>>>>>> [run] Caused by: java.sql.SQLException: Failed to connect to
>>>>>> url "jdbc:hsqldb:hsql://localhost/hsqldb" as user "sa. Perhaps
>>>>>> there was an error launching the db server. In addition,
>>>>>> sometimes the database cache can become corrupt, so another
>>>>>> solution is to remove the
>>>>>> "/Users/jianwu/.kepler/cache/cachedata/hsqldb" directory.
>>>>>> [run] at
>>>>>> org.kepler.util.DBConnectionFactory.getDBConnection(DBConnectionFactory.java:126)
>>>>>>
>>>>>> [run] at
>>>>>> org.kepler.util.DBConnectionFactory.getDBConnection(DBConnectionFactory.java:99)
>>>>>>
>>>>>> [run] at
>>>>>> org.kepler.gui.KeplerInitializer.initializeSystem(KeplerInitializer.java:156)
>>>>>>
>>>>>> [run] at
>>>>>> org.kepler.gui.KeplerInitializer.<init>(KeplerInitializer.java:92)
>>>>>> [run] at
>>>>>> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native
>>>>>> Method)
>>>>>> [run] at
>>>>>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
>>>>>>
>>>>>> [run] at
>>>>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
>>>>>>
>>>>>> [run] at
>>>>>> java.lang.reflect.Constructor.newInstance(Constructor.java:513)
>>>>>> [run] at java.lang.Class.newInstance0(Class.java:355)
>>>>>> [run] at java.lang.Class.newInstance(Class.java:308)
>>>>>> [run] at
>>>>>> ptolemy.actor.gui.ConfigurationApplication.readConfiguration(ConfigurationApplication.java:446)
>>>>>>
>>>>>> [run] ... 16 more
>>>>>>
>>>>>> BUILD SUCCESSFUL
>>>>>> Total time: 15 seconds
>>>>>>
>>>>>> --
>>>>>>
>>>>>> Best wishes
>>>>>>
>>>>>> Sincerely yours
>>>>>>
>>>>>> Jianwu Wang
>>>>>> wangjianwu at gmail.com
>>>>>>
>>>>>> Post-Doctor
>>>>>> Scientific Workflow Automation Technologies (SWAT) Laboratory
>>>>>> San Diego Supercomputer Center University of California, San Diego
>>>>>> San Diego, U.S.A.
>>>>>>
>>>>>> _______________________________________________
>>>>>> Kepler-dev mailing list
>>>>>> Kepler-dev at kepler-project.org
>>>>>> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-dev
>>>>>
>>>>> _______________________________________________
>>>>> Kepler-dev mailing list
>>>>> Kepler-dev at kepler-project.org
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>>>>
>>>>
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>>>
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>>
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>
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