[kepler-dev] [Bug 4538] New: - problems with KARs that contain tags from default ontologies

[bugzilla-daemon at ecoinformatics.org]

http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4538

           Summary: problems with KARs that contain tags from default
                    ontologies
           Product: Kepler
           Version: 1.x dev
          Platform: Other
        OS/Version: All
            Status: NEW
          Severity: normal
          Priority: P2
         Component: tagging
        AssignedTo: barseghian at nceas.ucsb.edu
        ReportedBy: barseghian at nceas.ucsb.edu
         QAContact: kepler-dev at kepler-project.org


If you Save KAR a workflow that you've tagged with a tag that comes from an
existing ontology (e.g. one of the default choices in the tagging dropdown
menu), you get the following error. The KAR seems to come out fine, and
contains the tag. 

A similar error occurs when you export a run from the WRM, and in this case
these tags don't get serialized.


org.semanticweb.owl.model.OWLRuntimeException: Not an OWLClass.  This method
should only be called if the isAnonymous method returns false!
        at
uk.ac.manchester.cs.owl.OWLAnonymousDescriptionImpl.asOWLClass(OWLAnonymousDescriptionImpl.java:57)
        at
org.kepler.sms.NamedOntClass.getNamedSuperClasses(NamedOntClass.java:335)
        at
org.kepler.objectmanager.cache.CacheSearch.insertSemTypes(CacheSearch.java:354)
        at org.kepler.objectmanager.cache.CacheSearch.add(CacheSearch.java:323)
        at org.kepler.objectmanager.cache.CacheSearch.add(CacheSearch.java:254)
        at
org.kepler.objectmanager.library.LibraryManager.addKAR(LibraryManager.java:825)