[kepler-dev] SRB Put problems
Tristan King
tristan.king at jcu.edu.au
Sun Feb 5 17:26:26 PST 2006
Ok i got it working
turned out it was the constant actor i was using to pass into the
remoteDir input of the SPut actor that was breaking it. i changed this
to the string constant (or the geon one from the workflow you supplied).
Now i've got another few problems (see attached workflow).
Firstly, just a visual issue. If there is more than 1 file to be
uploaded (i.e. Display2 shows: {"/home/tristan/kepler/test.data",
"/home/tristan/kepler/test1.data", "/home/tristan/kepler/test2.data"})
all the files get uploaded, but only one of the files gets listed in
Display, i know this can be fixed by increasing the width of the
relation between the ArrayToElements and Display actors, but is there
some way to do this dynamically since there could (in theory) be an
infinate number of lines needing to be displayed. (for now i'll just get
rid of the ArrayToElements actor and make it print out the array)
The next problem is most likely a problem resulting from my actor.
When using a PN directory, the SPut actor seems to break. The first
iteration always works fine, cause there is always data needing to be
put into SRB. However the subsiquent iteration there is no garantee that
there is data needing to be SPut. It seems that executing SPut without
any data on the filesToPut input breaks it.
I get the following after i stop the workflow after it has run:
ptolemy.kernel.util.IllegalActionException: in .srb-dirpoll.SRB SPut
at org.srb.SPut.fire(SPut.java:285)
at ptolemy.actor.process.ProcessThread.run(ProcessThread.java:186)
I'll work on adding a trigger output to my DirectoryPoller actor so it
can trigger the SRB Connect actor so that it wont trigger the SPut if
there are no files to be put. (this is asuming that this is how the
trigger functionality work, please correct me if i'm wrong).
Also, is there anything i have to do to add my own semantic type, or is
it as simple as just adding it in the src/actors/actorname/actorname.xml
file?
thanks
--Tristan
On Mon, 2006-02-06 at 10:41 +1000, Tristan King wrote:
> Hi Nandita,
>
> sorry i should have mentioned that the settings in the SRBconnect wont
> work for you because it connected to an SRB server on my local machine
> (and the JCU firewall blocks incoming connections, i might have to look
> into building an SRB server on a dedicated box and getting external
> access allowed to it).
>
> I've tried the workflow you attached using my SRB's values and it worked
> flawlessly.
>
> So there must be something wrong with how I've structured the workflow i
> supplied, or with how my Actor outputs data.
>
> It shouldn't need an ElementsToArray actor, as my actor outputs the data
> as an ArrayToken containing StringTokens, the same as the
> DirectoryListing actor (see fire() method in DirectoryPoller.java i
> supplied in the previous email)
>
> I'll keep playing with the workflow to see if I can figure it out. I'm
> sure it'll just be something simple that i'm missing :)
>
> thanks
>
> --Tristan
>
> On Fri, 2006-02-03 at 15:54 -0800, Nandita Mangal wrote:
> > Also when you input Files to SRB Put actor ....do you use an
> > "ElementsToArray" actor <as the filesToPut port of SRBPut is
> > expecting an Array {string} > Thought i asked as your exception is in
> > regards to ArrayToken.
> >
> > Also could you test the simple SRB IO workflow which I have attached.
> > <kepler/workflows/srb/srbIO.xml> with your SRB
> > account information?
> > Let me know if you are to successfully upload n download SRB files.....
> > thanks.
> > nandita.
> >
> >
> > Nandita Mangal wrote:
> >
> > >Hi Tristan,
> > >I can't connect to SRB with the information in the SRB Connect.
> > >ptolemy.kernel.util.IllegalActionException: Could not create an SRB
> > >connection for channel 0: quiver.local
> > > in .<Unnamed Object>.SRB Connect
> > > in .<Unnamed Object>.SRB Connect
> > > at org.srb.SRBConnect.initialize(SRBConnect.java:182)
> > > at ptolemy.actor.process.ProcessThread.run(ProcessThread.java:133
> > >Could you double-check the connection info?
> > >
> > >thanks,
> > >nandita.
> > >
> > >Tristan King wrote:
> > >
> > >
> > >
> > >>Hi again everyone
> > >>
> > >>I'm having some trouble figuring out the SRB SPut actor.
> > >>
> > >>I'm getting the following error when i try and run the SPut actor
> > >>
> > >>java.lang.ClassCastException: ptolemy.data.ArrayToken
> > >> at org.srb.SPut.fire(SPut.java:166)
> > >>
> > >>I've attached the code for my directory polling actor and my workflow
> > >>xml for you all to play with. Just untar the tar into kepler/src/,
> > >>you'll have to add <include name="au/**"/> to the build.xml in the copy
> > >>src files section, line 339, if anyone can give me any info on how i
> > >>should actually name my packages that'd be great (au.edu.dart is just a
> > >>temporary thing till i find out about naming standards). You can always
> > >>just ignore my stuff and switch the DirectoryPoller and Sleep actor with
> > >>a constant containing an array of local file names in it (which i've
> > >>also tried and received the same errors).
> > >>
> > >>I'm probably doing something wrong, but i'm buggered if i can figure out
> > >>what :)
> > >>
> > >>thanks everyone
> > >>--Tristan
> > >>
> > >>
> > >>
> > >>------------------------------------------------------------------------
> > >>
> > >><?xml version="1.0" standalone="no"?>
> > >><!DOCTYPE entity PUBLIC "-//UC Berkeley//DTD MoML 1//EN"
> > >> "http://ptolemy.eecs.berkeley.edu/xml/dtd/MoML_1.dtd">
> > >><entity name="srb-dirpoll" class="ptolemy.actor.TypedCompositeActor">
> > >> <property name="_createdBy" class="ptolemy.kernel.attributes.VersionAttribute" value="5.1-alpha">
> > >> </property>
> > >> <property name="_windowProperties" class="ptolemy.actor.gui.WindowPropertiesAttribute" value="{bounds={227, 112, 855, 797}, maximized=false}">
> > >> </property>
> > >> <property name="_vergilSize" class="ptolemy.actor.gui.SizeAttribute" value="[600, 659]">
> > >> </property>
> > >> <property name="_vergilZoomFactor" class="ptolemy.data.expr.ExpertParameter" value="1.0">
> > >> </property>
> > >> <property name="_vergilCenter" class="ptolemy.data.expr.ExpertParameter" value="{276.0, 329.5}">
> > >> </property>
> > >> <property name="PN Director" class="ptolemy.domains.pn.kernel.PNDirector">
> > >> <property name="_svgIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>../kepler-docs/dev/usability/graphics/svg/director.svg</configure>
> > >> </property>
> > >> <property name="_thumbnailRasterIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>/actorthumbs/director-sm.gif</configure>
> > >> </property>
> > >> <property name="timeResolution" class="ptolemy.moml.SharedParameter" value="1E-10">
> > >> </property>
> > >> <property name="entityId" class="org.kepler.moml.NamedObjId" value="urn:lsid:kepler-project.org:director:2:1">
> > >> </property>
> > >> <property name="class" class="ptolemy.kernel.util.StringAttribute" value="ptolemy.domains.pn.kernel.PNDirector">
> > >> <property name="id" class="ptolemy.kernel.util.StringAttribute" value="urn:lsid:kepler-project.org:directorclass:2:1">
> > >> </property>
> > >> </property>
> > >> <property name="semanticType000" class="org.kepler.sms.SemanticType" value="urn:lsid:localhost:onto:1:1#Director">
> > >> </property>
> > >> <property name="_location" class="ptolemy.kernel.util.Location" value="{390, 145}">
> > >> </property>
> > >> </property>
> > >> <entity name="Display" class="ptolemy.actor.lib.gui.Display">
> > >> <property name="_svgIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>../kepler-docs/dev/usability/graphics/svg/text_disp.svg</configure>
> > >> </property>
> > >> <property name="_thumbnailRasterIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>/actorthumbs/text_disp-sm.gif</configure>
> > >> </property>
> > >> <property name="rowsDisplayed" class="ptolemy.data.expr.Parameter" value="10">
> > >> </property>
> > >> <property name="columnsDisplayed" class="ptolemy.data.expr.Parameter" value="40">
> > >> </property>
> > >> <property name="suppressBlankLines" class="ptolemy.data.expr.Parameter" value="false">
> > >> </property>
> > >> <property name="_windowProperties" class="ptolemy.actor.gui.WindowPropertiesAttribute" value="{bounds={541, 657, 428, 214}, maximized=false}">
> > >> </property>
> > >> <property name="entityId" class="org.kepler.moml.NamedObjId" value="urn:lsid:kepler-project.org:actor:7:1">
> > >> </property>
> > >> <property name="class" class="ptolemy.kernel.util.StringAttribute" value="ptolemy.actor.lib.gui.Display">
> > >> <property name="id" class="ptolemy.kernel.util.StringAttribute" value="urn:lsid:kepler-project.org:class:883:1">
> > >> </property>
> > >> </property>
> > >> <property name="semanticType000" class="org.kepler.sms.SemanticType" value="urn:lsid:localhost:onto:1:1#TextualOutputActor">
> > >> </property>
> > >> <property name="_location" class="ptolemy.kernel.util.Location" value="[525.0, 400.0]">
> > >> </property>
> > >> </entity>
> > >> <entity name="SRB Connect" class="org.srb.SRBConnect">
> > >> <property name="_svgIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>../kepler-docs/dev/usability/graphics/svg/basic-actor.svg</configure>
> > >> </property>
> > >> <property name="_thumbnailRasterIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>/actorthumbs/basic-actor-sm.gif</configure>
> > >> </property>
> > >> <property name="srbHost" class="ptolemy.kernel.util.StringAttribute" value="quiver.local">
> > >> </property>
> > >> <property name="srbPort" class="ptolemy.kernel.util.StringAttribute" value="5544">
> > >> </property>
> > >> <property name="srbUserName" class="ptolemy.kernel.util.StringAttribute" value="srbadmin">
> > >> </property>
> > >> <property name="srbPasswd" class="ptolemy.kernel.util.StringAttribute" value="d4r7r007">
> > >> </property>
> > >> <property name="srbHomeCollection" class="ptolemy.kernel.util.StringAttribute" value="/A/home/srbadmin.tristan-dart-test">
> > >> </property>
> > >> <property name="srbMdasDomainHome" class="ptolemy.kernel.util.StringAttribute" value="tristan-dart-test">
> > >> </property>
> > >> <property name="srbDefaultResource" class="ptolemy.kernel.util.StringAttribute" value="tristan-dart-test-res">
> > >> </property>
> > >> <property name="entityId" class="org.kepler.moml.NamedObjId" value="urn:lsid:kepler-project.org:actor:159:1">
> > >> </property>
> > >> <property name="class" class="ptolemy.kernel.util.StringAttribute" value="org.srb.SRBConnect">
> > >> <property name="id" class="ptolemy.kernel.util.StringAttribute" value="urn:lsid:kepler-project.org:class:1017:1">
> > >> </property>
> > >> </property>
> > >> <property name="semanticType000" class="org.kepler.sms.SemanticType" value="urn:lsid:localhost:onto:1:1#SRBExternalInputActor">
> > >> </property>
> > >> <property name="_location" class="ptolemy.kernel.util.Location" value="[45.0, 115.0]">
> > >> </property>
> > >> </entity>
> > >> <entity name="Constant" class="ptolemy.actor.lib.Const">
> > >> <property name="_svgIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>../kepler-docs/dev/usability/graphics/svg/basic-actor.svg</configure>
> > >> </property>
> > >> <property name="_thumbnailRasterIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>/actorthumbs/basic-actor-sm.gif</configure>
> > >> </property>
> > >> <property name="value" class="ptolemy.data.expr.Parameter" value="{"/A/home/srbadmin.tristan-dart-test"}">
> > >> </property>
> > >> <property name="entityId" class="org.kepler.moml.NamedObjId" value="urn:lsid:kepler-project.org:actor:1:1">
> > >> </property>
> > >> <property name="class" class="ptolemy.kernel.util.StringAttribute" value="ptolemy.actor.lib.Const">
> > >> <property name="id" class="ptolemy.kernel.util.StringAttribute" value="urn:lsid:kepler-project.org:class:877:1">
> > >> </property>
> > >> </property>
> > >> <property name="semanticType000" class="org.kepler.sms.SemanticType" value="urn:lsid:localhost:onto:1:1#ConstantActor">
> > >> </property>
> > >> <property name="_icon" class="ptolemy.vergil.icon.BoxedValueIcon">
> > >> <property name="attributeName" class="ptolemy.kernel.util.StringAttribute" value="value">
> > >> </property>
> > >> <property name="displayWidth" class="ptolemy.data.expr.Parameter" value="40">
> > >> </property>
> > >> </property>
> > >> <property name="_location" class="ptolemy.kernel.util.Location" value="[170.0, 405.0]">
> > >> </property>
> > >> </entity>
> > >> <entity name="SRB SPut" class="org.srb.SPut">
> > >> <property name="_svgIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>../kepler-docs/dev/usability/graphics/svg/basic-actor.svg</configure>
> > >> </property>
> > >> <property name="_thumbnailRasterIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>/actorthumbs/basic-actor-sm.gif</configure>
> > >> </property>
> > >> <property name="confirmOverwrite" class="ptolemy.data.expr.Parameter" value="false">
> > >> </property>
> > >> <property name="entityId" class="org.kepler.moml.NamedObjId" value="urn:lsid:kepler-project.org:actor:256:1">
> > >> </property>
> > >> <property name="class" class="ptolemy.kernel.util.StringAttribute" value="org.srb.SPut">
> > >> <property name="id" class="ptolemy.kernel.util.StringAttribute" value="urn:lsid:kepler-project.org:class:1082:1">
> > >> </property>
> > >> </property>
> > >> <property name="semanticType000" class="org.kepler.sms.SemanticType" value="urn:lsid:localhost:onto:1:1#SRBExternalInputActor">
> > >> </property>
> > >> <property name="_location" class="ptolemy.kernel.util.Location" value="[300.0, 300.0]">
> > >> </property>
> > >> <property name="_expertMode" class="ptolemy.kernel.util.SingletonAttribute">
> > >> </property>
> > >> </entity>
> > >> <entity name="DirectoryPoller" class="au.edu.dart.DirectoryPoller">
> > >> <property name="_svgIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>../kepler-docs/dev/usability/graphics/svg/basic-actor.svg</configure>
> > >> </property>
> > >> <property name="_thumbnailRasterIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>/actorthumbs/basic-actor-sm.gif</configure>
> > >> </property>
> > >> <property name="Directory" class="ptolemy.actor.parameters.FilePortParameter" value="/home/tristan/kepler">
> > >> <property name="allowFiles" class="ptolemy.data.expr.Parameter" value="false">
> > >> </property>
> > >> <property name="allowDirectories" class="ptolemy.data.expr.Parameter" value="true">
> > >> </property>
> > >> </property>
> > >> <property name="entityId" class="org.kepler.moml.NamedObjId" value="urn:lsid:kepler-project.org:actor:451:1">
> > >> </property>
> > >> <property name="class" class="ptolemy.kernel.util.StringAttribute" value="au.edu.dart.DirectoryPoller">
> > >> <property name="id" class="ptolemy.kernel.util.StringAttribute" value="urn:lsid:kepler-project.org:class:451:1">
> > >> </property>
> > >> </property>
> > >> <property name="semanticType000" class="org.kepler.sms.SemanticType" value="urn:lsid:localhost:onto:1:1#ConstantActor">
> > >> </property>
> > >> <property name="_location" class="ptolemy.kernel.util.Location" value="[-3.3345489501953125, 264.51841735839844]">
> > >> </property>
> > >> </entity>
> > >> <entity name="Sleep" class="ptolemy.actor.lib.Sleep">
> > >> <property name="_svgIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>../kepler-docs/dev/usability/graphics/svg/basic-actor.svg</configure>
> > >> </property>
> > >> <property name="_thumbnailRasterIcon" class="ptolemy.kernel.util.ConfigurableAttribute">
> > >> <configure>/actorthumbs/basic-actor-sm.gif</configure>
> > >> </property>
> > >> <property name="sleepTime" class="ptolemy.actor.parameters.PortParameter" value="0L">
> > >> </property>
> > >> <property name="entityId" class="org.kepler.moml.NamedObjId" value="urn:lsid:kepler-project.org:actor:92:1">
> > >> </property>
> > >> <property name="class" class="ptolemy.kernel.util.StringAttribute" value="ptolemy.actor.lib.Sleep">
> > >> <property name="id" class="ptolemy.kernel.util.StringAttribute" value="urn:lsid:kepler-project.org:class:966:1">
> > >> </property>
> > >> </property>
> > >> <property name="semanticType000" class="org.kepler.sms.SemanticType" value="urn:lsid:localhost:onto:1:1#ControlActor">
> > >> </property>
> > >> <property name="_location" class="ptolemy.kernel.util.Location" value="{145, 315}">
> > >> </property>
> > >> <port name="sleepTime" class="ptolemy.actor.parameters.ParameterPort">
> > >> <property name="input"/>
> > >> <property name="_cardinal" class="ptolemy.kernel.util.StringAttribute" value="SOUTH">
> > >> </property>
> > >> </port>
> > >> </entity>
> > >> <relation name="relation3" class="ptolemy.actor.TypedIORelation">
> > >> <property name="width" class="ptolemy.data.expr.Parameter" value="1">
> > >> </property>
> > >> </relation>
> > >> <relation name="relation5" class="ptolemy.actor.TypedIORelation">
> > >> <property name="width" class="ptolemy.data.expr.Parameter" value="1">
> > >> </property>
> > >> </relation>
> > >> <relation name="relation4" class="ptolemy.actor.TypedIORelation">
> > >> <property name="width" class="ptolemy.data.expr.Parameter" value="1">
> > >> </property>
> > >> </relation>
> > >> <relation name="relation2" class="ptolemy.actor.TypedIORelation">
> > >> <property name="width" class="ptolemy.data.expr.Parameter" value="1">
> > >> </property>
> > >> </relation>
> > >> <relation name="relation" class="ptolemy.actor.TypedIORelation">
> > >> <property name="width" class="ptolemy.data.expr.Parameter" value="1">
> > >> </property>
> > >> </relation>
> > >> <relation name="relation6" class="ptolemy.actor.TypedIORelation">
> > >> <property name="width" class="ptolemy.data.expr.Parameter" value="1">
> > >> </property>
> > >> </relation>
> > >> <link port="Display.input" relation="relation5"/>
> > >> <link port="Display.input" relation="relation4"/>
> > >> <link port="SRB Connect.SRBFileSystem" relation="relation3"/>
> > >> <link port="Constant.output" relation="relation2"/>
> > >> <link port="SRB SPut.SRBFileSystem" relation="relation3"/>
> > >> <link port="SRB SPut.filesToPut" relation="relation6"/>
> > >> <link port="SRB SPut.uploadedFiles" relation="relation4"/>
> > >> <link port="SRB SPut.exitCode" relation="relation5"/>
> > >> <link port="SRB SPut.remoteDir" relation="relation2"/>
> > >> <link port="DirectoryPoller.output" relation="relation"/>
> > >> <link port="Sleep.input" relation="relation"/>
> > >> <link port="Sleep.output" relation="relation6"/>
> > >></entity>
> > >>
> > >>------------------------------------------------------------------------
> > >>
> > >>_______________________________________________
> > >>Kepler-dev mailing list
> > >>Kepler-dev at ecoinformatics.org
> > >>http://mercury.nceas.ucsb.edu/ecoinformatics/mailman/listinfo/kepler-dev
> > >>
> > >>
> > >>
> > >
> > >_______________________________________________
> > >Kepler-dev mailing list
> > >Kepler-dev at ecoinformatics.org
> > >http://mercury.nceas.ucsb.edu/ecoinformatics/mailman/listinfo/kepler-dev
> > >
> > >
> >
--
Tristan King | Ph: (07) 4781 6911
DART project team | Email: Tristan.King at jcu.edu.au
James Cook University | Web: http://dart.edu.au
Townsville QLD 4814 | http://plone.jcu.edu.au/dart/
Australia |
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